XLOC_010487 (cxcr3.1)


Basic Information

Item Value
gene id XLOC_010487
gene name cxcr3.1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 11853212 ~ 11859309 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00020581
AAAATGAATGTTGACTCAAAAACAACATTCAGTATGAAGGATTTCAGTGACTACACAGACCTTTACAATTACAGTGACTACAATGACAATGAAAGCTATGGCGCAGGAGCTGTGTGCACTCAAGACTCCAGCATGTACTTTGACAGCATTTTTAAGCCAATCCTTTACTCACTGGCAGCGGTCGTGGGGCTGCTGGGAAACGGCTTGGTTCTGATTGTACTGTGGAAGAAGAGAGCAGGTTTGAATGTTACAGACATCTTCATCCTCCACCTGAGCCTGGCAGATATTTTGCTGCTGTTAACACTGCCCTTCTGGGCTGTAGAGGCGGTGAAGGAGTGGATCTTTGGCACACCACTTTGCAAACTGACTGGAGCTATGTTCAGGATCAATTTCTACTGTGGCATTTACATGCTTTCCTGCATCAGTCTCGACCGCTACCTGTCCATCGTCCATGCAGTCCAAATGTACTCCCGTAAAAAGCCCATGGCGGTTCACTGTTGCTGCATGATAGTCTGGTTCTTCTGCTTTCTGCTCTCCATTCCCGATTGGATATTACTTGGTGCCAACAAGGACTCCAGACGTCAGGATAGAACAGAATGTGTTAATTCAGAAGCTCTATCTGATTTTTGGGTTCTGGTCAATCGTCTGATCTATCATTTTTTGGgtttcattattccagcaataatgATGGTCTTCTGCTACACTAGCATTCTGCTGCGCTTACTGCTCGGCTCCAAGTGCATGCAGAAGAAGAGGGCCATCCATGTCATTGTAGCCCTGGTACTGGCCTTCTTCATCAGCTGGACGCCCTACAACATCGCCCTCATGGCTGACACCATACATACCAACAGGACTGACAATAACCAAACGTCCTGCGAGACCAGAACCACGTTGGATGTTGCGATCACAGCCACTTCAACATTTGCCTACATGCACTGCTGTGTCAACCCAATTCTTTATGCTTTTGTGGGGGTGAAATTTCGTCAGCACCTGCTAGACATGCTACGACCTCTGGGCTTCAAGCTGAAGGGCCGCGCAGGCCTGGTTTCTCGGAAGAGCTCGGGATGGTCAGAGTCGGTGGACACTTCCCACACATCTGCTTTCTGAAGCATCAAATGCCATCAGACCATTACAGTATCTTTTCCTGTAATTGTTAACAAACATTGTTGTATTATGCAAGAGGAATCAAGAACTCAGGCGTTGTCGTTCACACCAATGACAATGACTAACAAaaggaaaaaagtcagaaaaaagTATTAGAGCTAATGGCATAAGTACCCTAATTTTGATGTGTTTACCCAGCAGGAATTGGGAATGATTTTAGTTATAGAAATCACCATTGAGGGAACTAAAAAATCACCTACTTCAAAAAATCCAGGTCTAATCCAGCTCAACTGGAACTACAACTGACATTAGTGTACACAGATTGGGTAAATGGCATGTCATAcaaaatacacagtattttaaagtgttacaagaCACATACTTGGTCTCGATGATACAGTATGTACCATTTCAAGTTGTCATATTTTGTCTCTCATTCTAATTTAGTTCTTTCAGTCACATATCTTATACGAGTATGTTCCATTTCTATTATTATGACATACACAAAATTCAAATAGAGTCCTTTGTGATTAAAAAACGACCCTAATAATTACAATTAGGACAACGGTCTAAGATGAAAATGTAGTTATTAGAgactttatctttttttttcgtCACACTCATGTGATCGAAGTGTTGTGAATGTTTTGTTGAGGTGTTTTTGGttaaaatgtgtgtaatattGATCATTTTGAAATTTTCGCTATAGAGAAAAAATGTAGACATGTTTAGATAGACGATCTATCTATTTCACTCTAAGACTCCAAACACAGCTGTCCTCTGACAACAGAGGAATAAAATCAATGGCTAAAACAATCATACAACATCGTCAACTTCTGTTTTGGAGGTTAATGTTACTTTAGTTTTAATAAACATCGTTATTATACGTGGTTTGAGCCAGTTTTTAATGTCGAGACTGTGCTGATTAATACGcagaatgttttaaaacatgaatttaGATGTTTAAGCTCTTCACATGTGGCAGCTACCATAGGTTTTCAACTGTTTAGCTTTCTCAAGCATATTGATTGCCTGCGACTTTGGACAGAGATCAAAGTTATATTACGTTAAAATAGATCACTTTCAATTACTCAACTGGATAATGATTTTGAAAAATTGTGGGAAGCtgaagtttatatatttttaatatttacttttttatatatattttttacttttttatattattcattatgcTTTGGagttttttatgtattgtttagTAATGCTTTCttgatatttactgtatgatgttCTATTTTTTCGGTATCTTTCTTTGctgtacatacattttaaaaaatcttttacataataatatgaaataGTACCGCCAGATATACATATTGGTTTTTAATATCTGTTTTTACTTTGATAtataacattttcatttgtgcTTGCATTAATCTTGTATCTATGAGGTCTGTCTCATTAATGCTGTAAAACTGCAGTACAATAAAACAGAAGCAAAATGGCTACagtttatgattatttattttactttcgaGTTCACCTTTGTTGAGTCCAAGTCCACAATGTGATATACATAGGAAAAAGGTAAATGAAAATACAACtggatttcttttttattgaatttaaaatcAAAACTGAACCATTATATTGGTTCTTGTTTATAAACCAATGGCATAACAAAAAGCTTAATGCTttgttattttaatgcattattccTACTAAAATACAAGGCAAATGGACAGTGGCA
>TCONS_00020582
TTTTAGCACCTCTCAACCTCTGCGTGATCACTTACAAAGAAAATGAATGTTGACTCAAAAACAACATTCAGTATGAAGGATTTCAGTGACTACACAGACCTTTACAATTACAGTGACTACAATGACAATGAAAGCTATGGCGCAGGAGCTGTGTGCACTCAAGACTCCAGCATGTACTTTGACAGCATTTTTAAGCCAATCCTTTACTCACTGGCAGCGGTCGTGGGGCTGCTGGGAAACGGCTTGGTTCTGATTGTACTGTGGAAGAAGAGAGCAGGTTTGAATGTTACAGACATCTTCATCCTCCACCTGAGCCTGGCAGATATTTTGCTGCTGTTAACACTGCCCTTCTGGGCTGTAGAGGCGGTGAAGGAGTGGATCTTTGGCACACCACTTTGCAAACTGACTGGAGCTATGTTCAGGATCAATTTCTACTGTGGCATTTACATGCTTTCCTGCATCAGTCTCGACCGCTACCTGTCCATCGTCCATGCAGTCCAAATGTACTCCCGTAAAAAGCCCATGGCGGTTCACTGTTGCTGCATGATAGTCTGGTTCTTCTGCTTTCTGCTCTCCATTCCCGATTGGATATTACTTGGTGCCAACAAGGACTCCAGACGTCAGGATAGAACAGAATGTGTTAATTCAGAAGCTCTATCTGATTTTTGGGTTCTGGTCAATCGTCTGATCTATCATTTTTTGGgtttcattattccagcaataatgATGGTCTTCTGCTACACTAGCATTCTGCTGCGCTTACTGCTCGGCTCCAAGTGCATGCAGAAGAAGAGGGCCATCCATGTCATTGTAGCCCTGGTACTGGCCTTCTTCATCAGCTGGACGCCCTACAACATCGCCCTCATGGCTGACACCATACATACCAACAGGACTGACAATAACCAAACGTCCTGCGAGACCAGAACCACGTTGGATGTTGCGATCACAGCCACTTCAACATTTGCCTACATGCACTGCTGTGTCAACCCAATTCTTTATGCTTTTGTGGGGGTGAAATTTCGTCAGCACCTGCTAGACATGCTACGACCTCTGGGCTTCAAGCTGAAGGGCCGCGCAGGCCTGGTTTCTCGGAAGAGCTCGGGATGGTCAGAGTCGGTGGACACTTCCCACACATCTGCTTTCTGAAGCATCAAATGCCATCAGACCATTACAGTATCTTTTCCTGTAATTGTTAACAAACATTGTTGTATTATGCAAGAGGAATCAAGAACTCAGGCGTTGTCGTTCACACCAATGACAATGACTAACAAaaggaaaaaagtcagaaaaaagTATTAGAGCTAATGGCATAAGTACCCTAATTTTGATGTGTTTACCCAGCAGGAATTGGGAATGATTTTAGTTATAGAAATCACCATTGAGGGAACTAAAAAATCACCTACTTCAAAAAATCCAGGTCTAATCCAGCTCAACTGGAACTACAACTGACATTAGTGTACACAGATTGGGTAAATGGCATGTCATAcaaaatacacagtattttaaagtgttacaagaCACATACTTGGTCTCGATGATACAGTATGTACCATTTCAAGTTGTCATATTTTGTCTCTCATTCTAATTTAGTTCTTTCAGTCACATATCTTATACGAGTATGTTCCATTTCTATTATTATGACATACACAAAATTCAAATAGAGTCCTTTGTGATTAAAAAACGACCCTAATAATTACAATTAGGACAACGGTCTAAGATGAAAATGTAGTTATTAGAgactttatctttttttttcgtCACACTCATGTGATCGAAGTGTTGTGAATGTTTTGTTGAGGTGTTTTTGGttaaaatgtgtgtaatattGATCATTTTGAAATTTTCGCTATAGAGAAAAAATGTAGACATGTTTAGATAGACGATCTATCTATTTCACTCTAAGACTCCAAACACAGCTGTCCTCTGACAACAGAGGAATAAAATCAATGGCTAAAACAATCATACAACATCGTCAACTTCTGTTTTGGAGGTTAATGTTACTTTAGTTTTAATAAACATCGTTATTATACGTGGTTTGAGCCAGTTTTTAATGTCGAGACTGTGCTGATTAATACGcagaatgttttaaaacatgaatttaGATGTTTAAGCTCTTCACATGTGGCAGCTACCATAGGTTTTCAACTGTTTAGCTTTCTCAAGCATATTGATTGCCTGCGACTTTGGACAGAGATCAAAGTTATATTACGTTAAAATAGATCACTTTCAATTACTCAACTGGATAATGATTTTGAAAAATTGTGGGAAGCtgaagtttatatatttttaatatttacttttttatatatattttttacttttttatattattcattatgcTTTGGagttttttatgtattgtttagTAATGCTTTCttgatatttactgtatgatgttCTATTTTTTCGGTATCTTTCTTTGctgtacatacattttaaaaaatcttttacataataatatgaaataGTACCGCCAGATATACATATTGGTTTTTAATATCTGTTTTTACTTTGATAtataacattttcatttgtgcTTGCATTAATCTTGTATCTATGAGGTCTGTCTCATTAATGCTGTAAAACTGCAGTACAATAAAACAGAAGCAAAATGG

Function

symbol description
cxcr3.1 Predicted to enable C-C chemokine binding activity and C-C chemokine receptor activity. Predicted to be involved in several processes, including calcium-mediated signaling; cell chemotaxis; and positive regulation of cytosolic calcium ion concentration. Predicted to act upstream of or within several processes, including G protein-coupled receptor signaling pathway; angiogenesis; and regulation of leukocyte migration. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in external side of plasma membrane. Human ortholog(s) of this gene implicated in asthma. Orthologous to human CXCR3 (C-X-C motif chemokine receptor 3).

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0007204 positive regulation of cytosolic calcium ion concentration biological_process
GO:0006935 chemotaxis biological_process
GO:0006954 inflammatory response biological_process
GO:0006955 immune response biological_process
GO:0002685 regulation of leukocyte migration biological_process
GO:0019722 calcium-mediated signaling biological_process
GO:0007165 signal transduction biological_process
GO:0060326 cell chemotaxis biological_process
GO:0009897 external side of plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0016493 C-C chemokine receptor activity molecular_function
GO:0016494 C-X-C chemokine receptor activity molecular_function
GO:0004930 G protein-coupled receptor activity molecular_function
GO:0004950 chemokine receptor activity molecular_function
GO:0019956 chemokine binding molecular_function
GO:0019957 C-C chemokine binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-060130-38 Predicted to enable C-C chemokine binding activity and C-C chemokine receptor activity. Predicted to be involved in several processes, including calcium-mediated signaling; cell chemotaxis; and positive regulation of cytosolic calcium ion concentration. Predicted to act upstream of or within several processes, including G protein-coupled receptor signaling pathway; angiogenesis; and regulation of leukocyte migration. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in external side of plasma membrane. Human ortholog(s) of this gene implicated in asthma. Orthologous to human CXCR3 (C-X-C motif chemokine receptor 3).

Ensembl:

ensembl_id ENSDARG00000007358

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00020581 False 2821 mRNA 0.37 2 11853212 11858009
TCONS_00020582 True 2615 mRNA 0.38 3 11853457 11859309

Neighbor

gene id symbol gene type direction distance location
XLOC_010486 cnfn coding downstream 54218 11790640 ~ 11798994 (-)
XLOC_010485 tlr21 coding downstream 64104 11785967 ~ 11789108 (-)
XLOC_010484 zgc:158701 coding downstream 73551 11760602 ~ 11779661 (-)
XLOC_010483 NA coding downstream 213740 11597384 ~ 11639472 (-)
XLOC_010482 BX005242.1 coding downstream 314391 11437869 ~ 11538821 (-)
XLOC_010488 cd4-1 coding upstream 52588 11911897 ~ 11946139 (-)
XLOC_010489 si:ch73-296e2.3 coding upstream 101108 11960417 ~ 11963804 (-)
XLOC_010490 usp5 coding upstream 106062 11965371 ~ 11986321 (-)
XLOC_010491 NA coding upstream 133257 11992566 ~ 12005084 (-)
XLOC_010492 CU467865.1 coding upstream 152765 12012074 ~ 12012188 (-)
XLOC_010626 CR392024.2 misc upstream 9035803 20895112 ~ 20895175 (-)
XLOC_010480 NA non-coding downstream 841560 10980052 ~ 11011652 (-)
XLOC_010479 NA non-coding downstream 933778 10917584 ~ 10919434 (-)
XLOC_010478 CU468227.1 non-coding downstream 936808 10916290 ~ 10916404 (-)
XLOC_010497 CR388102.3 non-coding upstream 380098 12239407 ~ 12239460 (-)
XLOC_010498 CR388102.2 non-coding upstream 388553 12247862 ~ 12247920 (-)
XLOC_010499 CR388102.4 non-coding upstream 390959 12250268 ~ 12250323 (-)

Expression


Co-expression Network