CI01000069_03939251_03942780 (RCN3)


Basic Information

Item Value
gene id CI01000069_03939251_03942780
gene name RCN3
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000069
NCBI id null
chromosome length 5329268
location 3939204 ~ 3943095 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000069_03939251_03942780.mRNA
AGGGTGTACTCAAGCAGAAATCACTGCAGGCTTGGTAAGTCACTTCTACAAGTTATGATGAAAAATATTTGCATTTTAAACTTGTAAACAATTTTTACTGCCAGTACAGTTCATTCAATAGTCATTATCTGCTGTAAATCGCTGCTTAATACAAAACATTATCATACATTTGTTTTTGTTTTTTATTTTTATTCTTTAAAATAAAATAGTTGATGCTTATTCTGAAAGTTTAAATAAGATGTCTATGCTCTATAATTTAGTTTAAAATTGAATGAGACCATTGAAGATAAAGTTTAATTTTCATTGCTAAGCACAATGACTTTGTGTCAGTGTAAAACATACTTTTTCAGGCCAGAAAGAATTAATAAAATATTTCTTTCTTACACACTCTTTAGGGAGAATATGCAGCTGCTCTTGTTGGGGACTCTTGCCCTGTTTGCCGGGGTCACAGTTGCTGTGCCTGCGCAGGAGAAGCGTGTACATCATAAGCCTGACCTCAGTGATCATGCTCACGATGATGCCCATGGTTTTCAGTATGACCACGAGGCCTTCCTGGGCAAAGAGGAAGCCAAGACCTTTGACCAGCTGAGCCCGGAGGAGAGCAAAGAGAGACTAGGAAAGATTGTGGATAAGATTGACACAGATAAGGATGGTTTTGTCAGTCATGCTGAGCTACACCACTGGATCAAGCACAGGCAGAGGAGGTACATTGAAGAGAACGTGGACAAGCACTGGAAAGAGTACGACCAGAACAAGGATGGGAAGATTGGATGGACTGAGTATAAGAACACCACCTACGGATATTATATGGATGTAGAGTTTGATGATATAGATGATAAGGCCAGTTACAAAGCCATGCTCACTAGAGATGAGAGACGGTTCAATTCCGCAGACCGGGATGGGGACGGTATCGCTACAAGAGAAGAGTTCACTGCCTTCCTCCATCCAGAGGAGTTTGACTACATGAGACACATTGTGATACAGGAAACAATTGAAGACATTGACAAGAATGGTGATGGCAAGATTGATCTGCAGGAATACATTGGGGACATGTTCACCCCTGAAAATGGAGAGAATGAACCAGACTGGGTCACAAAAGAAAAGAAACACTTCTCAGAGTTCAGAGACATGAATAAGGACGGTTTCCTTGATGCCAATGAAGTATCTCATTGGATCCTCCCTGGAGAGGTGGATCATGCTGATAACGAGGCCCGGCATCTCATTCACGAAACTGATAAAGACAACGATGGTCGTCTCTCTATCAGTGAGATAATGGATAGAATGGATTTCATTAAAGTCAGCACGATAACTGACTTTGGGACGCTGGTAGATCACGATGAACTTTAACCCTGTTATGACCACAAAAAGCCTTAATGTCTCTTTAAACTATTAAA

Function

symbol description
rcn3 Predicted to enable calcium ion binding activity. Predicted to be active in endoplasmic reticulum. Is expressed in several structures, including epidermis; head mesenchyme; hypochord; mesoderm; and pectoral fin. Orthologous to human RCN3 (reticulocalbin 3).

GO:

id name namespace
GO:0005509 calcium ion binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000069_03939251_03942780.mRNA True 1394 mRNA 0.41 7 3939204 3943095

Neighbor

gene id symbol gene type direction distance location
CI01000069_03871972_03884153 NA coding downstream 55051 3871925 ~ 3884153 (-)
CI01000069_03804630_03807180 PRMT1.S, PRMT1 coding downstream 132024 3804616 ~ 3807180 (-)
CI01000069_03768812_03787588 BRSK1 coding downstream 151616 3765673 ~ 3787588 (-)
CI01000069_03739653_03764284 CPT1CB coding downstream 174920 3738450 ~ 3764284 (-)
CI01000069_03721128_03722393 NA coding downstream 216811 3720944 ~ 3722393 (-)
CI01000069_03972492_03982847 TSPAN4B coding upstream 28995 3972090 ~ 3982957 (-)
CI01000069_03986480_03988243 NA coding upstream 42082 3985177 ~ 3988612 (-)
CI01000069_04129986_04133876 MYLPFB, MYLPF, MLC-2, MYLPFA coding upstream 186630 4129725 ~ 4133923 (-)
CI01000069_04140312_04141990 NA coding upstream 196519 4139614 ~ 4142844 (-)
CI01000069_04160575_04161329 NA coding upstream 216891 4157983 ~ 4161329 (-)
G275946 NA non-coding downstream 38038 3900905 ~ 3901166 (-)
G275827 NA non-coding downstream 90225 3848581 ~ 3848979 (-)
G275773 NA non-coding downstream 95618 3839234 ~ 3843586 (-)
G275790 NA non-coding downstream 112624 3823392 ~ 3826580 (-)
G275756 NA non-coding downstream 142252 3791589 ~ 3796952 (-)
G275953 NA non-coding upstream 16475 3959570 ~ 3959891 (-)
G275966 NA non-coding upstream 84863 4027958 ~ 4028557 (-)
G275970 NA non-coding upstream 93244 4036339 ~ 4036573 (-)
G275972 NA non-coding upstream 94390 4037485 ~ 4037709 (-)
G275975 NA non-coding upstream 109733 4052828 ~ 4053065 (-)
CI01000069_03415853_03417644 LIMD2 other downstream 512830 3412973 ~ 3417644 (-)
G275699 NA other downstream 861036 2992504 ~ 3078168 (-)
CI01000069_04932463_04940554 NA other upstream 996426 4932144 ~ 4941471 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location