XLOC_010493 (si:ch211-69g19.2)


Basic Information

Item Value
gene id XLOC_010493
gene name si:ch211-69g19.2
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 12052010 ~ 12060782 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00020592
ATGGTTGTAAATTTTACGACAAGCGACCTACACGTTGTTCAGGTTAACTTCTTATGCAAGTTATGTTTTAATATGCCATACCGTTTTTCAGCAGCAAACAGAAACATGGGTGCCAGTGAAAGCAAAATGACCGTGGCATCAACACCAAAGGTAACGTTAGACCCGAGTCAGCGACCCAAAGCAGCGCGTGTGGCGAAACTTGCAGACCCACGTTCACCGTCCTGTGCCATTGACCGCACACCTATACAGGTGGGCGTTACTTACTCTCCTCTCCCTGTGGTGGAGTCAGTTGGGCCTGTGTTTGTTGACCCTCGCTCACCAACCCCGGGCATCACCCGAACGCCAATGAAGGTGAGCGTCACGTCTCTCGCTCGAAGACTGAGCACGTTCTTCCTCAGTGACATCAAGTCTGGCGACTCTCCCGCGTCTCCTCTTCCTTCAGTCTCCTTCACCAAAACCTCTGGCATGCCTGGTGTAGCTCATCCAAACACCTTCGGCCCCAAAGAGCCTCTGTTGAAACCCCAGAGCTCGCACACAGACGCCATCTCCACCCCTGTGCTGTCGTCTCCATCTGAGGGCTACGGCTCCATATGCCACAGTCCGTTCGTGTTGATTGGAGAGCCACAGATGGAGGTGGAGGTTGACACTGAGGCATCGCTAGAGGAGGCAGAGGAGGCTCTGCTTCTGGGGGCTTCACCGTTGAGGAAAGAGCTTAGCCTGAGTCTGCTTGCATGTCGTGAAGGGGTTTACTCGTCTTCCCTGGAAGAACGTCCTCTGACTCCTCTTCCTCCTGCGGACAGACAAGCCAATGAAGATCATTCGTATGCAGTCTTCACCATCCCAAAATCCACTGATAATGCTGAGTCTGAGGCCACGCCGTCGGTTGTTGAGGCTGTCTTGACTTTAGAGGAAGAGGAAGTTCCATCCCAGACATCTGAAGAACcgGCATCTGCTGCACTTCCAGAGCCGATTCCTGAGCAGCCAGAGGAAAACAAACCGCCAACACCTCAACCAGCTGATGCCTCCAGCAAACCCAGCCCAGTGTCCAGCACTCAGGTGGAGTCGGTGCAGCCTGGCATCCGCTGTCTGAGGTTTGACACCCGCAGCCCCAGTCAGGCCATTTTCAAGCCCCAGTGGTTGGGTGTGGGCTTTGGGGCCTCTGGTGTCCGAGCGAGAGGGGTTCAGAGCCGGGGGAAGACGGCAGTGTCCTCACCACGCAACATCAAAAACACTGCTACTAATGAGAATAATAACATGGTTGTGCGCACCAAACAGAAGCCGAGAGAAAAAGTGCTGATTGGCGAGGGCAGATCTCCTCTGCAGATCCTGAGGGAGACCAATTCACCCAGAGAACGCAACTCGCAGATGAAATTGAAAGTGTCGACTCCAGAAAGACAGAGGTTCAGCCAGATGGACAGAAGAGCTCTGATTATGTCCCTCGACAAAGAGAACGAGTGAGAGCAGATCCACACACCAGCACAAACCTCAGACAACACTATGTGTATAAACCATTTGAAACCTGCAACTACATGATTCTTCTTTTTCCTGCTTTTTACTTTTTGTTCcttttgtgtgtttgtaaataaacactcttttaatgtaaataaaattaactttggATTTATAATTTTGTCgtcttgttgtttttgtttaatcccaTATGAGGACACTGGCTTTAATTGTTATTAGAAtagcttttattaatttttaaaaagtacttaaAGTACTGAGAAAAGGTTGGTTCTGTCATTAAATCAAAAATCTTGTTCTGTTTAATTTCCATatccacatttatttaaaatactaacTATTTAGTAATGGCAAACTCTTATCCTTTATCAGTGTGCAGAGTATTTAACCTAAATCCAATTTAAACATTTGCCTTTCTAGCACTAGCAAAGCCCAGCAACTAGCCCATTACGT
>TCONS_00020593
CAGCCCCAGTCAGGCCATTTTCAAGCCCCAGTGGTTGGGTGTGGGCTTTGGGGCCTCTGGTGTCCGAGCGAGAGGGGTTCAGAGCCGGGGGAAGACGGCAGTGTCCTCACCACGCAACATCAAAAACACTGCTACTAATGAGAATAATAACATGGTTGTGCGCACCAAACAGAAGCCGAGAGAAAAAGTGCTGATTGGCGAGGGCAGATCTCCTCTGCAGATCCTGAGGGAGACCAATTCACCCAGAGAACGCAACTCGCAGGTACTTACTAGCTGCAAACACACAGACCTTGGTTATCATTTTACTGTCATCTTTCATGCTCTGTAATGACCAACATCTAAATGAATGTTGGTGTCTCTCTTCAGATGAAATTGAAAGTGTCGACTCCAGAAAGACAGAGGTTCAGCCAGATGGACAGAAGAGCTCTGATTATGTCCCTCGACAAAGAGAACGAGTGAGAGCAGATCCACACACCAGCACAAACCTCAGACAACACTATGTGTATAAACCATTTGAAACCTGCAACTACATGATTCTTCTTTTTCCTGCTTTTTACTTTTTGTTCcttttgtgtgtttgtaaataaacactcttttaatgtaaataaaattaactttggATTTATAA
>TCONS_00020594
TCCTTATTGTGCAGTCACACGCGCAGAGTTTGAACTGGAAGACGACACAAGGCGTTTCTTTGTtgatttctcatttttatttgtttatattaaaacgTGAAAGAAACGCCGTCTGATTTGGAGTGAAAGAGAAAAGCATACAGTGGACTGCGGGAAAACATCGAGCATTAAGCAGCAAACAGAAACATGGGTGCCAGTGAAAGCAAAATGACCGTGGCATCAACACCAAAGGTAACGTTAGACCCGAGTCAGCGACCCAAAGCAGCGCGTGTGGCGAAACTTGCAGACCCACGTTCACCGTCCTGTGCCATTGACCGCACACCTATACAGGTGGGCGTTACTTACTCTCCTCTCCCTGTGGTGGAGTCAGTTGGGCCTGTGTTTGTTGACCCTCGCTCACCAACCCCGGGCATCACCCGAACGCCAATGAAGGTGAGCGTCACGTCTCTCGCTCGAAGACTGAGCACGTTCTTCCTCAGTGACATCAAGTCTGGCGACTCTCCCGCGTCTCCTCTTCCTTCAGTCTCCTTCACCAAAACCTCTGGCATGCCTGGTGTAGCTCATCCAAACACCTTCGGCCCCAAAGAGCCTCTGTTGAAACCCCAGAGCTCGCACACAGACGCCATCTCCACCCCTGTGCTGTCGTCTCCATCTGAGGGCTACGGCTCCATATGCCACAGTCCGTTCGTGTTGATTGGAGAGCCACAGATGGAGGTGGAGGTTGACACTGAGGCATCGCTAGAGGAGGCAGAGGAGGCTCTGCTTCTGGGGGCTTCACCGTTGAGGAAAGAGCTTAGCCTGAGTCTGCTTGCATGTCGTGAAGGGGTTTACTCGTCTTCCCTGGAAGAACGTCCTCTGACTCCTCTTCCTCCTGCGGACAGACAAGCCAATGAAGATCATTCGTATGCAGTCTTCACCATCCCAAAATCCACTGATAATGCTGAGTCTGAGGCCACGCCGTCGGTTGTTGAGGCTGTCTTGACTTTAGAGGAAGAGGAAGTTCCATCCCAGACATCTGAAGAACcgGCATCTGCTGCACTTCCAGAGCCGATTCCTGAGCAGCCAGAGGAAAACAAACCGCCAACACCTCAACCAGCTGATGCCTCCAGCAAACCCAGCCCAGTGTCCAGCACTCAGGTGGAGTCGGTGCAGCCTGGCATCCGCTGTCTGAGGTTTGACACCCGCAGCCCCAGTCAGGCCATTTTCAAGCCCCAGTGGTTGGGTGTGGGCTTTGGGGCCTCTGGTGTCCGAGCGAGAGGGGTTCAGAGCCGGGGGAAGACGGCAGTGTCCTCACCACGCAACATCAAAAACACTGCTACTAATGAGAATAATAACATGGTTGTGCGCACCAAACAGAAGCCGAGAGAAAAAGTGCTGATTGGCGAGGGCAGATCTCCTCTGCAGATCCTGAGGGAGACCAATTCACCCAGAGAACGCAACTCGCAGATGAAATTGAAAGTGTCGACTCCAGAAAGACAGAGGTTCAGCCAGATGGACAGAAGAGCTCTGATTATGTCCCTCGACAAAGAGAACGAGTGAGAGCAGATCCACACACCAGCACAAACCTCAGACAACACTATGTGTATAAACCATTTGAAACCTGCAACTACATGATTCTTCTTTTTCCTGCTTTTTACTTTTTGTTCcttttgtgtgtttgtaaataaacactcttttaatgtaaataaaattaactttggATTTATAA
>TCONS_00020595
CCATTTAAATGCTCCTTATTGTGCAGTCACACGCGCAGAGTTTGAACTGGAAGACGACACAAGGCGTTTCTTTGTtgatttctcatttttatttgtttatattaaaacgTGAAAGAAACGCCGTCTGATTTGGAGTGAAAGAGAAAAGCATACAGTGGACTGCGGGAAAACATCGAGCATTAAGCAAACAGAAACATGGGTGCCAGTGAAAGCAAAATGACCGTGGCATCAACACCAAAGGTAACGTTAGACCCGAGTCAGCGACCCAAAGCAGCGCGTGTGGCGAAACTTGCAGACCCACGTTCACCGTCCTGTGCCATTGACCGCACACCTATACAGGTGGGCGTTACTTACTCTCCTCTCCCTGTGGTGGAGTCAGTTGGGCCTGTGTTTGTTGACCCTCGCTCACCAACCCCGGGCATCACCCGAACGCCAATGAAGGTGAGCGTCACGTCTCTCGCTCGAAGACTGAGCACGTTCTTCCTCAGTGACATCAAGTCTGGCGACTCTCCCGCGTCTCCTCTTCCTTCAGTCTCCTTCACCAAAACCTCTGGCATGCCTGGTGTAGCTCATCCAAACACCTTCGGCCCCAAAGAGCCTCTGTTGAAACCCCAGAGCTCGCACACAGACGCCATCTCCACCCCTGTGCTGTCGTCTCCATCTGAGGGCTACGGCTCCATATGCCACAGTCCGTTCGTGTTGATTGGAGAGCCACAGATGGAGGTGGAGGTTGACACTGAGGCATCGCTAGAGGAGGCAGAGGAGGCTCTGCTTCTGGGGGCTTCACCGTTGAGGAAAGAGCTTAGCCTGAGTCTGCTTGCATGTCGTGAAGGGGTTTACTCGTCTTCCCTGGAAGAACGTCCTCTGACTCCTCTTCCTCCTGCGGACAGACAAGCCAATGAAGATCATTCGTATGCAGTCTTCACCATCCCAAAATCCACTGATAATGCTGAGTCTGAGGCCACGCCGTCGGTTGTTGAGGCTGTCTTGACTTTAGAGGAAGAGGAAGTTCCATCCCAGACATCTGAAGAACcgGCATCTGCTGCACTTCCAGAGCCGATTCCTGAGCAGCCAGAGGAAAACAAACCGCCAACACCTCAACCAGCTGATGCCTCCAGCAAACCCAGCCCAGTGTCCAGCACTCAGGTGGAGTCGGTGCAGCCTGGCATCCGCTGTCTGAGGTTTGACACCCGCAGCCCCAGTCAGGCCATTTTCAAGCCCCAGTGGTTGGGTGTGGGCTTTGGGGCCTCTGGTGTCCGAGCGAGAGGGGTTCAGAGCCGGGGGAAGACGGCAGTGTCCTCACCACGCAACATCAAAAACACTGCTACTAATGAGAATAATAACATGGTTGTGCGCACCAAACAGAAGCCGAGAGAAAAAGTGCTGATTGGCGAGGGCAGATCTCCTCTGCAGATCCTGAGGGAGACCAATTCACCCAGAGAACGCAACTCGCAGATGAAATTGAAAGTGTCGACTCCAGAAAGACAGAGGTTCAGCCAGATGGACAGAAGAGCTCTGATTATGTCCCTCGACAAAGAGAACGAGTGAGAGCAGATCCACACACCAGCACAAACCTCAGACAACACTATGTGTATAAACCATTTGAAACCTGCAACTACATGATTCTTCTTTTTCCTGCTTTTTACTTTTTGTTCcttttgtgtgtttgtaaataaacactcttttaatgtaaataaaattaactttggATTT

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000070656

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00020592 False 1923 mRNA 0.48 6 12052010 12060488
TCONS_00020593 False 628 lncRNA 0.45 2 12052306 12054234
TCONS_00020594 False 1708 mRNA 0.51 7 12052306 12060770
TCONS_00020595 True 1713 mRNA 0.51 7 12052310 12060782

Neighbor

gene id symbol gene type direction distance location
XLOC_010492 CU467865.1 coding downstream 39822 12012074 ~ 12012188 (-)
XLOC_010491 NA coding downstream 46926 11992566 ~ 12005084 (-)
XLOC_010490 usp5 coding downstream 65689 11965371 ~ 11986321 (-)
XLOC_010489 si:ch73-296e2.3 coding downstream 88206 11960417 ~ 11963804 (-)
XLOC_010488 cd4-1 coding downstream 105871 11911897 ~ 11946139 (-)
XLOC_010494 pex5 coding upstream 3794 12064576 ~ 12097558 (-)
XLOC_010495 clstn3 coding upstream 41554 12102336 ~ 12173647 (-)
XLOC_010496 lpcat3 coding upstream 113655 12174437 ~ 12236362 (-)
XLOC_010497 CR388102.3 coding upstream 178625 12239407 ~ 12239460 (-)
XLOC_010498 CR388102.2 coding upstream 187080 12247862 ~ 12247920 (-)
XLOC_010626 CR392024.2 misc upstream 8834330 20895112 ~ 20895175 (-)
XLOC_010483 NA non-coding downstream 412538 11597384 ~ 11639472 (-)
XLOC_010482 BX005242.1 non-coding downstream 513189 11437869 ~ 11538821 (-)
XLOC_010480 NA non-coding downstream 1040358 10980052 ~ 11011652 (-)
XLOC_010499 CR388102.4 non-coding upstream 189486 12250268 ~ 12250323 (-)
XLOC_010500 CR388102.5 non-coding upstream 192633 12253415 ~ 12253471 (-)
XLOC_010507 CU694256.1 non-coding upstream 463950 12524732 ~ 12532027 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000016_05124385_05128589 CDCA3 coding CI01000016 null 5124259 ~ 5128975 (-)