CI01000069_04802439_04905601 (CACNA1A)


Basic Information

Item Value
gene id CI01000069_04802439_04905601
gene name CACNA1A
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000069
NCBI id null
chromosome length 5329268
location 4801597 ~ 4905886 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000069_04802439_04905601.mRNA
AGTGGGAAACGAACCTGTGAACTGCAAAATATAAGGCACGCTATTTTGTTCCATTTTGTTTGTTTGTTTTTTTGTTCGTTTTATTTTTCGTTTTCGCCTAAAATTGAGCCTAACCATCAGCTCCTGGAGTCTAACGTCACATACACACGCCATGAAGACAAATGTGTACTCCAGTTATACACGTATTAAGTTTTGAAGCAGATGGGATGTAATGTGGTGTGGTCGCGTTGAATATTCGCCCCCTTTTTTCCTGCTTCGTGAAGACTGGCATTTGGAGTCTATAGAATGGCTCGGTTCGGAGATGAGGTGCCGTCCAGGTATGGCGGAGGACCGGGACACGCTCAAGGGGGACCTGGCCGCGGCGGCAGCAGGCAGGGTGGCCCGCCGGGTGGTCAACAGAGAATGTACAAGCAGTCAATGGCCCAGCGAGCCAGAACTATGGCCCTGTACAACCCTATACCGGTGCGGCAAAACTGCTTCACTGTCAACCGATCTCTGTTCATCTTCAGTGAGGACAACTTTGTGAGAAAATACGCCAAAAAGATCACCGAATGGCCATATCCTTTTTTAAAACCCACTAACGGGCGGCGCTGTGGCTCGCGGAGGCTTGCTGATGTCAGCATGTGCAGTCTCTCAGCTTGGTCTCATTCGAGAGAAAGCGATGGCATGATTGTAAAAGATAGAAATATTGGATTGGCAAAGGATTCAGATATTTACAATATTATATTCTTTTCCTTCACTCAGTCTTCTTGTCTCAACTTGTCTCTGCATCTCTCTCCATCCATCTCTCTGTGGAGCGGAGTGTCAGGCGGCTGTGCTGACGGTGCAGACTGCACTTGGCTGAATGAAGATGGGTTGATGGAGGGAGATGATGAATGCACAGGTTCAGTGGGAGAGATACACAAATTGGCCTGCAGTAAATACGAGCGGCAAGTGATGAGGTCATTTAAAGCATACAGAATCTGCCTGACTCATACTCATCCACAGCGTGCATTACTTCAGCATGAATACCAGCTTATTCGCCACAGGCTCAACCAGCCGTACAAGGAGATGTACATGATCCTGGCTACCATCATCGCTAACTGCATCGTCCTGGCCCTGGAACAGCATCTTCCAGACGGGGACAAGACACCAATGTCAGAGCGTTTGGAGGACACTGAACCTTACTTCATTGGCATTTTCTGTTTCGAGTCTGGCATTAAGATCTTGGCTCTGGGCTTTGCCTTCCATAAGGGCTCTTACCTACGTAATGGCTGGAATGTTATGGACTTTGTAGTGGTGCTTACTGGAATTCTGTCAACAGTGGGTTCTGACTTTGACCTGAGAACGCTGCGTGCTGTTCGAGTGTTAAGACCTCTCAAACTTGTGTCTGGGATTCCAAGCTTGCAGGTTGTTCTCAAGTCCATTATGAAAGCCATGATCCCTCTGCTGCAGATCGGTCTGCTGCTATTCTTTGCCATCCTCATGTTCGCCATCATTGGTCTAGAGTTCTACATGGGCAAATTTCACACCACTTGCTTTGACAAAGTCACTGATGAAATCCGAGAGGAGTTTCCATGCGGGCCTGAGGCTCCTGCTCGGATCTGTCCTAATGGAACAGTATGTAAAAAGTACTGGCTAGGACCTAACTACGGTATTACCCAGTTTGACAACATCCTGTTTGCCGTGCTCACGGTCTTCCAATGCATCACCATGGAGGGCTGGACTGACCTGCTATACTATGGCTCTATATATAACACACCCTGCTCAACTGAAGTTATTCTTACAGCTGCTGAGAAAGAAACCTATGAAAATTTAATTGCAAAAAAGCTGCAGTACATACTGGGGCTTTCAGAGCTCTCAGACATGGAGTGGACGAAAAAGAAGTGGGGCAGATTAAAGGAGACAGAAAAAGGGACAGGGAGGAAGACTATGTGGCAGGGTGCAGCGGTGCCGAGCACCCAGCTGTGCGTACCACAGATGAAGCAGCCCCAGCCAGATGGTTGCTACTCTCAGGTTGCACATCGCATGAGCAATGATGCTTCAGGGAGTGCATGGAACTGGATGTACTTCATCCCCCTCATCATCATCGGCTCCTTCTTCATGCTCAATCTTGTGCTGGGTGTGCTGTCAGGAGAGTTTGCCAAAGAAAGGGAGCGAGTGGAGAACAGGAGCGAGTTTCTTAAGCTGAAGCGTCAGCAGCAGATAGAGAGAGAGCTGAATGGATATCTGGAGTGGATCTGCAAAGCAGAAGAGGTGATTCTAGCTGACGAGGACAATGACCCAGATGACCGGATGCCCTTTGACGGTATTTACGTGAACTCCATCCTTCCTTCCTTTTCATCCCCCTCTCCTCCTCTCTTTGCTCCCTCACTGGGACTAGGTGTTGATTTCCCATTATATTGGGCATCTCTGAGGAACCTGGTGGTGTCTTTGTTGAACTCCATGAAGTCCATCATCAGTTTACTCTTCCTCCTTTTCCTCTTCATTGTGGTCTTTGCTCTTCTGGGCATGCAGCTGTTTGGAGGACAGTTTAATTTTGAATCCGGCACACCACCAACAAACTTTGATACTTTTCCTGCAGCAATAATGACAGTGTTTCAGATCCTGACGGGTGAAGACTGGAACATGGTCATGTATGATGGGATTGAATCTCAGGGTGGAGTCAGAACGGGCATGGTCTTCTCAGTCTTCTTCATTGTTCTTACACTCTTCGGCAACTATACTTTGCTCAATGTGTTCTTGGCCATCGCTGTGGACAATCTGGCCAATGCACAAGAGCTGACCAAGGATGAACAGGAGGAAGAGCAGGCAGCCAATCAGAAAATGGCTCTTCAGACGGCCAAGGAAGTAGCTGAGGTCAGCCCACTGTCTGCAGCCAGCCTCTCCATTGCTGCCGTGACAGTAAACTCTGAGCGTCTTGATGCAACAGAACACTTTCTGGACTGCAAGGAGCAACAGAAGAACCACAAAGGTTGTAAGTCAGTATGGGAGCAGCGCACTAGTGAGTTGAGGCGACAGACCCTGGTGAACAGCAGAGAGGCTCTTTACAATGAGTTGGACCCTGAAGAACGCTGGAAGGTCTCGTACTCCCGTCACATTCGTCCCGATATGAAGACCCACCTGGACCGGCCATTGGTCGTGGACCCTCAGGAGAACCGCAATAACAATACCAACAAAACCCGTCCAGGTGACGGCCAGCCCCAGCGCACTCATCAGCTCCTGCACAAACAGCCCAACTTCAATGAGGGGGAGAGTGGTGGAGGTGGAGGATCTGGGCCCTGGCCAGCATTGGAAAGAGGGGACTCTACGGGCTCACGTCGGAGTCTTTTGGGCTCCGAGAACCATGGGGAGGGTAGAGAGTCTCACCGCAGACATCAGCACGGCGAGCGCTGCAGCCAGGCCCGTCAACGTCGTAAAGCCCCAGAGGAGGATGGAGAGGGCGGAGGGAGGAGACACAGGAGTAAAGGCAGGGAAAGAGGACCTGATTGTGAGCATATAGATGGAGGAGAGCGTAAACACAGACGTCATCACCATGAGGGCGAGGGAAGGAAAGAGAGAGGGGTGCGACACCGCACCAGGAAGGATGGTCATGGAAGTGGCCCTACTCTCTCCACGACCCGTCCCATTCAGAAGACTCTGTCCAGGCAGGACAGTCAGTACAGTGAGGATCTGGACAATGCCATGAACAACAAGCTTGCCACACAGCCACCTAGTAGCTCCACCCCACATGATAGTCTGCTCAATCTGGCTAACAGTGCCCACACTGCCAGCCTGGCACATACTGGCACAGAGAGCAGCCTCATTCTCACCAACCCTTCCTCTACCACTACTAACGTTGCTAGCACTGGACATCTGGGCATGAAACCCGAGTACACAGCCGTGGACATTCCCCCAATGTTCCCCTCCAGTAACGCCATCCTACAGGTCAATAAAAATGCCAACACTGAGCCCCTGCCCAAAAAGGAAGACACAAAGGGTGATGATGATGATGATGAAAAAGGTGACGGGGGGCCTAAACCCATGCCACCCTACACCTCAATGTTCATTCTGACTACCACCAACCCATTTCGGAGGTTGTGCCACTATATTGTCACGCTCAGATATTTTGAGATGTGTATTCTGCTGGTCATTGCGATGAGCAGTATTGCCCTGGCCGCTGAAGACCCTGTCTGGCCCGAATCCCCCCGCAATAATGTCCTGCGGTACTTTGACTATGTGTTCACGGGTGTGTTCACCTTTGAGATGCTCATTAAGATGGTGGATTTAGGTCTTGTCCTGCATCAAGGCTCATATTTCCGTGACCTGTGGAACATCCTGGACTTTATTGTGGTTAGTGGTGCCCTGGTGGCGTTCGCCTTCACACTGATCTGTCTGTCTGATTGTCCGTTCAAACGTCCTCTCACCACGTCCCTCACACATAGGACACATGCCAAGGGCAAGGTCCTTTTATATGTTTATTTTTTGTGTTTGCCAATGGACAACCCCAAAAACAAGAAAGAAAGAGGTTTGGCTGGGCATTCCGCAGCAGGGATGCCTGAGTCTGCTCCGTATGTTTCATGCTGTTGTCATGGCAATGTAATGAAACCAGCCAGTGTTCCTTGGGAAAAGAGTGGAAGCAGCAAAGGGAAAGACATCAGTACTATCAAGTCCCTACGTGTGCTCCGAGTACTGCGGCCTCTGAAAACCATCAAGCGTCTGCCCAAGCTGAAGGCTGTCTTTGACTGTGTGGTGAACTCTCTAAAGAATGTGTTGAACATCCTCATTGTCTACATGCTGTTCATGTTCATCTTTGCTGTGGTGGCTGTGCAGCTCTTTAAGGGCCGTTTCTTCTACTGTACTGATGAATCCAAGGAGTTTGAGCGGGATTGCAGGGGCGAGTATCTTGTCTATGAAAGAGATAACGAAGTGAGGGCGCAGAAGCGGGAATGGAAGAAATACGATTTCCACTACGACAACGTGCTCTGGGCCCTTCTCACCCTCTTCACCGTATCTACGGGAGAGGGGTGGCCGCAGGTGCTGAAACATTCAGTGGATGCGACCTACGAGAATCAGGGCCCGAGCCCAGGTTACCGGATGGAAATGTCCATCTTTTACGTGGTGTACTTTGTGGTCTTCCCCTTCTTCTTCGTCAACATTTTCGTTGCTCTCATCATCATCACTTTCCAGGAGCAAGGAGACAAAATGATGGAGGAATATAGCCTGGAAAAGAATGAGAGAGCTTGTATAGACTTCGCCATCAATGCTAAACCGCTCACACGTCACATGCCTCAGAACAAGCAAACATTCCAGTACCGCATGTGGGAGTTTGTGGTGTCTCCTCCATTTGAATACACAATCATGGCCTTGATTGCCCTCAATACCATTGTCCTTATGATGAAGTATGATGGAGCATCACAAACCTATGAAGATGTGTTAGCCAACCTGAACATAGTGTTCACCTCACTTTTCTCCATGGAGTGCATACTGAAGATCATTGCCTTTGGAGCACTGAACTACTTCAAAGACGCCTGGAACATCTTCGACTGTGTGACTGTACTTGGCAGCATCACTGATATTTTAGTCACAGAGCTAGGGGCTCTGCCGTATGTGTGCCTACTCATCGCCATGCTGTTCTTCATCTACGCCATCATTGGCATGCAGCTGTTTGGGAACATTTCGCTTGAAGACAATGGTGAGAGTGCCATTAACCAGCACAACAACTTCAGGACTTTTTTCCAGGCCCTAATGCTGCTCTTCAGGAGTGCTACAGGTGAGGCATGGCATGAAATCATGCTGTCATGTCTGGGAAAGAAGGTGTGTGATCGTCTCTCTGGTAACACGGAGGCAGAATGTGGGAGCGAGTTTGCCTACCTCTACTTTGTCTCCTTCATCTTCCTCTGTTCCTTTCTGATGTTGAATCTTTTCGTGGCTGTGATCATGGATAATTTTGAATACCTGACACGTGACTCCTCTATCCTGGGACCCCATCATCTGGACGAGTATGTGAGGATCTGGGCAGAGTATGATCCAGCTGCTTGTGGCAGAATCAGTTACAGGGATATGTATGAGATGCTCAGGCACATGTCTCCTCCGTTAGGCCTGGGGAAGAAGTGCCCTGCACGGGTTGCCTACAAGTGTTGGCTGCTCTGTTGCTTGTCCTGTGATGCATGTGACTGCATGATGCATGCTGGGAAAGAGGATGGTGGGGGGTGGAGGAGACTGTTGCGGATGGATCTGCCAGTTGCCGATGACAACACAGTGCACTTTAATTCTACCCTTATGGCCTTAATCCGAACTGCTCTGGACATCAAGATCGCCAAGGGTGGGGAAGGAGGTGTGGATAAACACCAAATGGATGCTGAACTAAGGAAGGAGATGATGGCGATATGGCCTAATCTCTCTCAGAAGACTCTGGACCTTCTAGTGACGCCACACAAGTCAGCGACAGACCTGACAGTTGGAAAGATCTACGCTGCCATGATGATCATGGAGTACTATCGGCAAAGTAAAGCCAAACGGACACAAGCTCTCCATGATGAGCAGAATCGAACGACATTAATGTTTCAGCGTCTGGAGCCGCCGTCTCCAAGCCAGGATGTGGGGCAGGGACTCACTGGCCTTCCTGAAACTCAACCGCACCCAGCAAATCATCTGCCTGTTGATGAAAGGATACCGGAGAGCCAATCATGGGTGACGGCGCGGGCCCAAGAGATGTCTCAGAAAGCAGGCTGGAGTCCTGAAGGCCAACACCCAGACGACACAGAAGAAAACCACAGACAATCTCAGGGTGAAGGGAGAGATGAAGGTGGAGATGTCCTCCTTCCATCCACTGTGCTTAGGCCTGTCTCTCCAGGCCCCTGGCATTCCACTCTTGCCTGCTGTCCCTGGGCAGTCATGCATGGTCTCCCTCTGTTTCTGCAGACAGTAGAGATGAGAGAGATGGGGCGGGACGGGTACTCGGACACTGAGCACTATCTGTCGATGGAAGGCCATGGCAGGGCTGCTTCCATGCCTCGACTCCCAGCAGACAACCAACAGACCATCACCGATAACAGTCCTATGAAGCGCTCGGCTTCATCTCTGGGACACGGGCGTCCAGGCCGCCCAATGCGGGGTGAGGACTACGTCATGGAGAGGGTTATCCCAGAAGAGGGCCACAGACATGGGCATCGCCACCGAGACCGCAGTCACCGCGCATCAGAGCGGTCCCTGAGCCGCTACACCGATGCTGACACAGATAAGGAGCACTATGGACATGAGAGAGAACGAGGAGACTACGGCCACAGACAGTCTAGAGAGAGAGACCGCCGCTGGTCCCGCTCACCAAGTGAGGGCAGAGAGTGCCTGACTCACAGACAGGGCAGTAGTTCAGTAAGCGGCAGTCCAGTCCCCTCCACCTCCGGGACCAGCACGCCCCGCCGCGGCCGGCGTCAACTACCCCAAACCCCCGCTACGCCCCGGCCCCACGTTACCTACTCTCCCGTGGTCCGTAAGCCCATCGGGGGCACCCCCCCTCCCGGCCAGCAGAACCGACTGCCTGCCCCGACCTCCCGTCGGTTCAGTCCGCCTGGCCCCGAGCCCCCGCTTCCCCCTCACCACCATCCGTCGCCTCCCCACCACGGCTCTCCCCGCTCCTCCCGTCATGCTCACTGGGGCCCCGGCCCTACGGAGAGTGTGGAGGGCGACGGTTTCTACGATGACCAAGACTATGAGTTCAATCACCATGAACCTCCATCCTACGAGCAAAGCCCTGTGCAGGGCAACCCTCACCCACATTCCCCCAGGACTTCCCGCCACAGCACCCCCCCTCAGGGCCACCCGCGGCGCATGCCAAATGGCTACCGTTCGTCCTCGCCCTCTCCGCACCACCACGCCACCAACCACCCGGGAACGCATAAGCCTCCTCATCCCAGAGGGCCCAGGAAGGGCCTCCATGAACCCTACAGTGAGACTGATGAGGATGACTGGTGCTAGCCTCTGGGACGGGGAGGGGCAAGTCCTTCCACTCTTTCTGGAACGGACTGCCACCAAACAGAGCGTAGGCTCACAGTAAAACAATACTTTCACTGGATTGGCCGATCTGTCCAGGGAAACACTTGGCAGTGCGCTGAATGTCCACAGGGGAAATCAAGGCATGATTCGTTTCTTTCTATTTCTTGTTTCTTTTCCGATTCCTCTGCTGCCAAGTGTTTCTCTGAAAGCAACGGACTGCTGACAGTGAATATGAAGACTAACGAATATGAAATCCTGTTCTTAGCTTTTTTCTGAAGAATACAAAAAATGTTTTGATAAGGAGGAGGAATGTCTGAACATTTTTTTCCCCCAGGACATTTCATGCAGTCCCTCCAGAAATGAGACGCTACAAACTCTTTAGCACTCGTTTAAAAAAAAAAAAAAAACAACAACGGTGAGGTGGGTCACTTTTTATTTCACAGAACTTGAATGGAGATTCGTTTATTGCAAAAATCAGTCCAGATGCTGGGAAATATCGATGAGTTTTATCATCTATGTTTACTGTTAATAATTATCCCAGTTGAGGGGGAGGCGTTCGCCCGTGCGGGTAAGTTGTGGGTGGGAAATGGAGATGGGTGGAGGTGAACTCACCTGAACTAAAATAGGAAAGTCCACCCTGCACTTCAGCCCCCCCAGAATGCAAGAAAGAAGAATCACAAAAAAAAAAAAAAAAAGGAGAGAAAAATGAAAAGCTCCTCACTCTTTCTTCTTCTTCGGCTTCGTCTTCTGCTTCTCATTGGAAACACTGGAGTTTGAATCTTCTGTTGCACTGCCCAGCTTTGTTTGAACTCCTAGAAAATAAA

Function

symbol description
cacna1a Enables high voltage-gated calcium channel activity and syntaxin binding activity. Involved in several processes, including calcium ion transmembrane transport; cellular response to amyloid-beta; and positive regulation of cytosolic calcium ion concentration. Located in several cellular components, including cell projection; nucleus; and plasma membrane. Implicated in developmental and epileptic encephalopathy 42; hereditary ataxia (multiple); and migraine (multiple).

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000069_04802439_04905601.mRNA True 8777 mRNA 0.51 52 4801597 4905886

Neighbor

gene id symbol gene type direction distance location
CI01000069_04692723_04695795 ELFN2 coding downstream 105030 4692492 ~ 4696567 (-)
CI01000069_04628032_04638137 SGSM3 coding downstream 163460 4627853 ~ 4638137 (-)
CI01000069_04603992_04607459 NA coding downstream 194011 4603099 ~ 4607586 (-)
CI01000069_04599199_04600481 RL23, RPL23, RPL23.L coding downstream 201116 4599169 ~ 4600481 (-)
CI01000069_04595809_04598174 NA coding downstream 203423 4595750 ~ 4598174 (-)
CI01000069_04919538_04930550 GTF2F1 coding upstream 13133 4919019 ~ 4930550 (-)
CI01000069_04932463_04940554 NA coding upstream 26258 4932144 ~ 4941471 (-)
CI01000069_04942590_04973602 NA coding upstream 36525 4942411 ~ 4973663 (-)
CI01000069_04983344_04983640 IGHV4-2 coding upstream 77436 4983322 ~ 4983640 (-)
CI01000069_04985959_04986408 NA coding upstream 79807 4985693 ~ 4986424 (-)
G276071 NA non-coding downstream 8794 4791382 ~ 4792803 (-)
G276114 NA non-coding downstream 90635 4704052 ~ 4710962 (-)
G276094 NA non-coding downstream 98128 4699271 ~ 4703469 (-)
G276133 NA non-coding downstream 131786 4669332 ~ 4669811 (-)
G276129 NA non-coding downstream 136184 4665170 ~ 4665413 (-)
G276107 NA non-coding upstream 98493 5004379 ~ 5009473 (-)
G276193 NA non-coding upstream 153447 5059333 ~ 5059568 (-)
G276103 NA non-coding upstream 180231 5086117 ~ 5089577 (-)
G276078 NA non-coding upstream 188232 5094118 ~ 5096986 (-)
G276095 NA non-coding upstream 232472 5138358 ~ 5152509 (-)
CI01000069_03804630_03807180 PRMT1.S, PRMT1 other downstream 994520 3804616 ~ 3807180 (-)
CI01000069_03768812_03787588 BRSK1 other downstream 1032377 3765673 ~ 3787588 (-)
CI01000069_03415853_03417644 LIMD2 other downstream 1375223 3412973 ~ 3417644 (-)
G275699 NA other downstream 1723429 2992504 ~ 3078168 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location