CI01000069_04919538_04930550 (GTF2F1)


Basic Information

Item Value
gene id CI01000069_04919538_04930550
gene name GTF2F1
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000069
NCBI id null
chromosome length 5329268
location 4919019 ~ 4930550 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000069_04919538_04930550.mRNA
AGAATTTATTATACCTATTTATCGAATACCCTAATAAGAAACGATATCAGCAGCCGGACGAGGTACTACAAGCAAAGTGACTACAAGCAAAAGATCATCGGATCTTCTCTAGTTGGCCGGTTGAAGGTTATTAAGGGTACTTCTTGCTCTGCAGTGATGACATCACTGGGGAGCAGCAGTTCCTCCACGACGGAGTATGTAGTTCGAGTTCCTAAAAACACCAATAAGAAATACAACATAATGGCTTTCAATTCTGGTGATAAAGTCAGTTGTTCCACCTGGACTCAGGCTCGTATGGAGCGGGACATGAGTAATAGGCGTATATATGGTGAGGAGGAGAGTCAGGAGGGGGCGGCAGGCAGTGAGTTTGGAAAGAAACAGAGAGAGGAATCACGGAGGAAGAAGTATGGCATCATTACGAAGGAGTTCAAGGTGGAGGACCAGCCCTGGATCCTTAAAGTTAACGGCAAGGCAGGAAGAAGATTCAAGGGTCTAAAAAAAGGCGGAGTCACAGAGAACGCTTCCTACTACATCTTCACACAGTGTGCTGATGGTGCCTTTGAGGCGTTTCCTGTGCACGCCTGGTATAACTTCACACCGCAGGCCAAACACCGCACACTCACAGCTGAGGAGGCAGAGGAAGAGTGGGGCAGGGGTGGAGACCTGCGCATACATGACCTCGAGGATGACCTGGAAATGAGCAGCGATGAGAGCGACGGCAGCAATGGAGAGGATGATGAAACCAAGTCGAAAGGTAAAAAGGACAAAGGCCCCAAAGGCAAGGGAAAGAAGAAGAAAAAGGGCAGCGACTTGGAAGGATTCGAGGATAGTGATGATGGCGACTTTGAGGGGTTGGAGGTGGACTACATGTCTGATGAGAGCAGTTCTGAAGAAGAGGAGCAAGAGAAGACCAAGCCTAATAAGGGAGAGGATGTCCCTAAAGGAATTGATGAAATGTCTGAGAAAAGCAGTGGCGAGTCAGACAGCTCTGAGGACAGTGATATTGAAGGCGAGGCAGCTTCAGCACTGTTCATGGTGGTAATGGCCTATATTTGTGTGTATGTGCGTTTTGTTTGGGAGAGAGAATCGAATGAGAGGGAGAGAAAGAAGCGCACACCTCCTAAGCGAGGGGGCGGGCGTGGCTCAGCAGGTAGTTCAAGAACAGGAAGTCGGCCTGGCACACCTTCTATCGACAACGCTGCCACTTCAAACACTCTACGTGCCGCTGCCAACAAACTGGAACAAGGTAAGCGGCAGACGACAATACCAAGCTCAGAGACTCCGGCGGCAAAGAGATTAAAGATGGAGCCCAGCCCTCAGAGCTCTTCAGGAAAGAGCACACCCCAACCAGCATCAGGGAAATCCACCCCCAGCTCCAGTGATGTGCAGCTGACGGAGGATGCCGTGCGCAGGTATCTCATCAGGAAGCCCATGACCACTAAAGACCTGCTGAAGAAGTTCCAGACTAAGCGCACAGGCCTCAGCAGTGAGCAGACGGTCAACGTGCTCGCCCAGATCTTGAAGAGGCTTAACCCAGAGAGGAAGAACATCAATGAAAAGATGCACTTCTACCTCACTGAGTGAACCCAACTGAGGAGAGAGTGAAACACTGAGCACCCATCACCAGCAGCCTCTCCTTTTAGAATACAGCTCATTTAGTCCAAGACCTTGATGGTCTGAATCTTGCTGTCATTTTGCTTTAAATCATCCAGCATTTATTAACAGTAGTTCTTAAATACTGTTAATTAGTGATGAGAGCGCTGGAGGTCCAAATAGTAAAACGACAAAGAAAATGGTGAGAAGAAAGATAGAGTATGTTTTTGTTTATTATAATGGATATTGGAATGATGTGTTTGTAAATTTCACATGCCTCTTAATGACGAGTTTATTATCAGAGAGACACTGGGTAATATTCTTTCAAGAAAGCTGATGAATTTTGAGAGCGACTTTACCCAGAGAATGCAGCTGCATCTGTGGCTTTTTATTACACATTCATTTCTTTGTCTGCTTTATTTTTTAAACTGGTTTAAGAACATTGCACCGTTTAAAAGCTGTTACAGTTACAACTTTTGCAGGAGTTTTTCTCCTTGGTAATACATTAAA

Function

symbol description
gtf2f1 Predicted to enable RNA polymerase II general transcription initiation factor activity and TFIIF-class transcription factor complex binding activity. Predicted to be involved in transcription initiation from RNA polymerase II promoter. Predicted to act upstream of or within positive regulation of transcription elongation from RNA polymerase II promoter. Predicted to be located in nucleus. Predicted to be part of transcription factor TFIIF complex. Orthologous to human GTF2F1 (general transcription factor IIF subunit 1).

GO: NA

KEGG:

id description
K03138 TFIIF1, GTF2F1, TFG1; transcription initiation factor TFIIF subunit alpha

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000069_04919538_04930550.mRNA True 2103 mRNA 0.47 14 4919019 4930550

Neighbor

gene id symbol gene type direction distance location
CI01000069_04802439_04905601 CACNA1A coding downstream 13133 4801597 ~ 4905886 (-)
CI01000069_04692723_04695795 ELFN2 coding downstream 222452 4692492 ~ 4696567 (-)
CI01000069_04628032_04638137 SGSM3 coding downstream 280882 4627853 ~ 4638137 (-)
CI01000069_04603992_04607459 NA coding downstream 311433 4603099 ~ 4607586 (-)
CI01000069_04599199_04600481 RL23, RPL23, RPL23.L coding downstream 318538 4599169 ~ 4600481 (-)
CI01000069_04932463_04940554 NA coding upstream 1594 4932144 ~ 4941471 (-)
CI01000069_04942590_04973602 NA coding upstream 11861 4942411 ~ 4973663 (-)
CI01000069_04983344_04983640 IGHV4-2 coding upstream 52772 4983322 ~ 4983640 (-)
CI01000069_04985959_04986408 NA coding upstream 55143 4985693 ~ 4986424 (-)
CI01000069_04996783_05001227 CLPP, CLPP.L coding upstream 65790 4996340 ~ 5001227 (-)
G276071 NA non-coding downstream 126216 4791382 ~ 4792803 (-)
G276114 NA non-coding downstream 208057 4704052 ~ 4710962 (-)
G276094 NA non-coding downstream 215550 4699271 ~ 4703469 (-)
G276133 NA non-coding downstream 249208 4669332 ~ 4669811 (-)
G276129 NA non-coding downstream 253606 4665170 ~ 4665413 (-)
G276107 NA non-coding upstream 73829 5004379 ~ 5009473 (-)
G276193 NA non-coding upstream 128783 5059333 ~ 5059568 (-)
G276103 NA non-coding upstream 155567 5086117 ~ 5089577 (-)
G276078 NA non-coding upstream 163568 5094118 ~ 5096986 (-)
G276095 NA non-coding upstream 207808 5138358 ~ 5152509 (-)
CI01000069_03804630_03807180 PRMT1.S, PRMT1 other downstream 1111942 3804616 ~ 3807180 (-)
CI01000069_03768812_03787588 BRSK1 other downstream 1149799 3765673 ~ 3787588 (-)
CI01000069_03415853_03417644 LIMD2 other downstream 1492645 3412973 ~ 3417644 (-)
G275699 NA other downstream 1840851 2992504 ~ 3078168 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location