CI01000069_04985959_04986408


Basic Information

Item Value
gene id CI01000069_04985959_04986408
gene name NA
gene type misc
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000069
NCBI id null
chromosome length 5329268
location 4985693 ~ 4986424 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU313215
CTTCATTGACTCAAACATGTCCAGCAACCTGCTTTACCTTCTGCTTTTACTGGCCTTTGCAAGAGTGAATGGTCAGAATATGGAGTCCATTTCTTCTCAATCAGTGGTAAAGCCTGGAGAAACTCTGAGTCTTTCCTGTAGAGGATCAGGATTTACTTTCGGAAGCTACAACATACACTGGGTCAGACAGCAACCTGGGAAAGCACTGATTTGGATGGGCCGTGTCTGGGCTAATGGACAAGGACATGAGTATTCCAAAAGTTTTGAGGGACGAATAGAAATTACTAGAGACAATTCAAAAAGCATGGTGTATCTGAAACTGTCTAGACTGACAGAAGAGGACTCAGCTGTGTATTTCTGTGCAGGAGAAGCGTGTAACTGGGCTTTCGACTACTGGGGA
>CI01000069_04985959_04986408.mRNA
ATGTCCAGCAACCTGCTTTACCTTCTGCTTTTACTGGCCTTTGCAAGAGTGAATGGTCAGAATATGGAGTCCATTTCTTCTCAATCAGTGGTAAAGCCTGGAGAAACTCTGAGTCTTTCCTGTAGAGGATCAGGATTTACTTTCGGAAGCTACAACATACACTGGGTCAGACAGCAACCTGGGAAAGCACTGATTTGGATGGGCCGTGTCTGGGCTAATGGACAAGGACATGAGTATTCCAAAAGTTTTGAGGGACGAATAGAAATTACTAGAGACAATTCAAAAAGCATGGTGTATCTGAAACTGTCTAGACTGACAGAAGAGGACTCAGCTGTGTATTTCTGTGCAGGAGAAGCACAGTGACATGAACCTGTGTGCAAATAATACTAAAACTGTCAAAACACACTGCAGTTATCATTTGTGTCAGTAGGTTGCAGTAGAATCCAACTAAAGTCAACAAGAATAGTGCCTCACAATCACATTTTCTTTTAAACACCTTCTCAGACATTCTCTCAACATCATGATACATTTTTATGGTTATTTAAAGCATTTCACTAGATTAAGTTCATTTGACAAACATTCTAGTTCATTTTATATTAGGTTTGGTTATTTAAGTGATTGAAAATAAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU313215 True 372 TUCP 0.45 2 4985966 4986424
CI01000069_04985959_04986408.mRNA False 629 mRNA 0.38 2 4985693 4986408

Neighbor

gene id symbol gene type direction distance location
CI01000069_04983344_04983640 IGHV4-2 coding downstream 2053 4983322 ~ 4983640 (-)
CI01000069_04942590_04973602 NA coding downstream 12030 4942411 ~ 4973663 (-)
CI01000069_04932463_04940554 NA coding downstream 44545 4932144 ~ 4941471 (-)
CI01000069_04919538_04930550 GTF2F1 coding downstream 55143 4919019 ~ 4930550 (-)
CI01000069_04802439_04905601 CACNA1A coding downstream 79807 4801597 ~ 4905886 (-)
CI01000069_04996783_05001227 CLPP, CLPP.L coding upstream 9932 4996340 ~ 5001227 (-)
CI01000069_05025745_05032197 YIPF2 coding upstream 38889 5025297 ~ 5032197 (-)
CI01000069_05042346_05044105 NA coding upstream 55867 5042275 ~ 5045235 (-)
CI01000069_05100248_05121420 TNRC6C1, TNRC6C coding upstream 113659 5100067 ~ 5121420 (-)
CI01000069_05227862_05278522 SEPT9A coding upstream 241454 5227862 ~ 5278522 (-)
G276071 NA non-coding downstream 192890 4791382 ~ 4792803 (-)
G276114 NA non-coding downstream 274731 4704052 ~ 4710962 (-)
G276094 NA non-coding downstream 282224 4699271 ~ 4703469 (-)
G276133 NA non-coding downstream 315882 4669332 ~ 4669811 (-)
G276129 NA non-coding downstream 320280 4665170 ~ 4665413 (-)
G276107 NA non-coding upstream 17971 5004379 ~ 5009473 (-)
G276193 NA non-coding upstream 72925 5059333 ~ 5059568 (-)
G276103 NA non-coding upstream 99709 5086117 ~ 5089577 (-)
G276078 NA non-coding upstream 107710 5094118 ~ 5096986 (-)
G276095 NA non-coding upstream 151950 5138358 ~ 5152509 (-)
CI01000069_03804630_03807180 PRMT1.S, PRMT1 other downstream 1178616 3804616 ~ 3807180 (-)
CI01000069_03768812_03787588 BRSK1 other downstream 1216473 3765673 ~ 3787588 (-)
CI01000069_03415853_03417644 LIMD2 other downstream 1559319 3412973 ~ 3417644 (-)

Expression


Co-expression Network