CI01000069_05025745_05032197 (YIPF2)


Basic Information

Item Value
gene id CI01000069_05025745_05032197
gene name YIPF2
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000069
NCBI id null
chromosome length 5329268
location 5025297 ~ 5032197 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000069_05025745_05032197.mRNA
ATGGCTAGTCCAGATGATCTAAAGTTTCAGGAGTTTGACGAAGCCGCAGATCTCCTGTCTTCAAACCCTGGAGCTGCAACCCTCAGCATCTCCAGCCCCAGCGCCGCAGCCTCCTCTGGAGAAGTTAAAGTGGATCTGTCAGACGATGAAGACAATCAGCAAGAGAGTTCAGAGTTGCTTGCAGGTGAAAAACAAACTGGTGGTTTTTGGACGTTTGAATACTATCAGTCGTTCTTCAACGTAGATACAGTGCAGGTGCTGGATAGGATAAAGGGCTCAGTTATGCCTTTGCCAGGAAGGAATTTCGTCAAACACAACATTCGAAGTAACCCTGATCTTTATGGTCCTTTCTGGATCTGTGTGACTCTAGTGTTCTCAGTGGCCATCAGTGGAAACATCTTCAAATTTCTAAGTGAAATGGGAGACACAGATTATCACTACAGACCTGAATTCCACAGAGTCTCAATCGCAGCAGTTGCTGTGTTCCTGTATGCATGGCTGGTGCCTCTAGGAGTTTGGGGCTTCCTAACATGGCGTCAAAGTGTTGAGAGACAGATCAGCGGTTACACGTTTTTAGAGACTGTTTGTGTGTACGGGTACTCTCTCTTCATTTATATCCCTACCTCGATATTATGGACCATTCCCTTATACTGGCTCCAGTGGCTGTTGATTGTCATTGCCATGGTGATCTCTGGCTCTGTGTTGGTCATGACATTCTGGCCGGCTGTTCGCGACGACACAAAACTAACGGCTTTCACTACCATGGCAGTTATAGTGTCACTTCATGCCCTTCTGGCTGTTGGCTGCAAGCTCTACTTCTTCCAAACGGCAACGTACACAGGATCATCACACTCCGGCCAACAGATTACCCCAGCCTCAAATCACACAGCACTTAACGTAGGAAAACATCAATGACCAGCTGAACGGGAACCTAGGAGTCTTTAGATTCAAAGGACATAGAAAATACAATGAAGGAGTTCTGATAAGTGTGCTAATGCTAGACGCACACACGCATTCCCAGCAAGTCCATCGAAAGTGTTTCCAGTCTGTAACTAACCTAGCAGATGAAATAACCTCCCTCAGATCAAAAGTGAAATCACAGTAATGATTTACTGACGACTTTAGTTTGTAGTATTTTTCTTGAAAACATTTATTACCTTTAATTTGATAGGGTGTTGTCCATTTTTGTATTTCTTGCATTACTGTGAACTGATTTGAGGTTTGCCTTATAACCCCTGACTGCTCTCTTTCCTTTCAAGACTACTTTCTCTCACTGTTCTGTAAATTGAGAGGAAGTACCTGTATTGAGTATTTAATTTTGCTTTCCTGGGCAGTTTTCTGTTTGATGACACTGTGGATTAAA

Function

symbol description
yipf2 Predicted to act upstream of or within vesicle-mediated transport. Predicted to be located in late endosome membrane. Predicted to be integral component of membrane. Predicted to be active in Golgi apparatus. Orthologous to human YIPF2 (Yip1 domain family member 2).

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000069_05025745_05032197.mRNA True 1363 mRNA 0.44 8 5025297 5032197

Neighbor

gene id symbol gene type direction distance location
CI01000069_04996783_05001227 CLPP, CLPP.L coding downstream 24070 4996340 ~ 5001227 (-)
CI01000069_04985959_04986408 NA coding downstream 38889 4985693 ~ 4986424 (-)
CI01000069_04983344_04983640 IGHV4-2 coding downstream 41657 4983322 ~ 4983640 (-)
CI01000069_04942590_04973602 NA coding downstream 51634 4942411 ~ 4973663 (-)
CI01000069_04932463_04940554 NA coding downstream 84149 4932144 ~ 4941471 (-)
CI01000069_05042346_05044105 NA coding upstream 10078 5042275 ~ 5045235 (-)
CI01000069_05100248_05121420 TNRC6C1, TNRC6C coding upstream 67870 5100067 ~ 5121420 (-)
CI01000069_05227862_05278522 SEPT9A coding upstream 195665 5227862 ~ 5278522 (-)
CI01000069_05321785_05324036 NA coding upstream 289074 5321271 ~ 5324097 (-)
G276107 NA non-coding downstream 15824 5004379 ~ 5009473 (-)
G276071 NA non-coding downstream 232494 4791382 ~ 4792803 (-)
G276114 NA non-coding downstream 314335 4704052 ~ 4710962 (-)
G276094 NA non-coding downstream 321828 4699271 ~ 4703469 (-)
G276133 NA non-coding downstream 355486 4669332 ~ 4669811 (-)
G276193 NA non-coding upstream 27136 5059333 ~ 5059568 (-)
G276103 NA non-coding upstream 53920 5086117 ~ 5089577 (-)
G276078 NA non-coding upstream 61921 5094118 ~ 5096986 (-)
G276095 NA non-coding upstream 106161 5138358 ~ 5152509 (-)
G276200 NA non-coding upstream 122839 5155036 ~ 5155302 (-)
CI01000069_03804630_03807180 PRMT1.S, PRMT1 other downstream 1218220 3804616 ~ 3807180 (-)
CI01000069_03768812_03787588 BRSK1 other downstream 1256077 3765673 ~ 3787588 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location