CI01000069_05100248_05121420 (TNRC6C1, TNRC6C)


Basic Information

Item Value
gene id CI01000069_05100248_05121420
gene name TNRC6C1, TNRC6C
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000069
NCBI id null
chromosome length 5329268
location 5100067 ~ 5121420 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000069_05100248_05121420.mRNA
TGCCAGACTCTGCCAAGCCCAGCCCCACCCCTCCTCCCCCCACCAACCCCAGCACCGCCATCAACCCGTCCGTGCCCTCAGCCAGCAGCAGCACTGGTGGCAATGGCAAGCGCGCACCCTCCGGCAATCAACAGCAGCAGCAGCCAGCAGCCCCTCGCTACCCGCCCAGAGAGGTGCCCCCTCGCTTCCGTCAACACGAACACAAGCAGCTACTGAAGCGGGGCCAACCTCTGCCCGCCGGGAGCACGGCTCTTGCGCAGCCAGTGTCTGCCAGCCTTACGCCTCAGCCCTTCTCCTGCCAGACCCACCCAGGAAAGTGGAAGAGCTGGTTATGGTGGAGGTCGTTTGGATGCTGGTTTGTACGGGCTGTTGGTGATATTGGCCCTTGCTCATACAGGTCCTCGCAGTGCAGCCTATGCTCAGAGGCTGGCTTGCTTTTGTGCATCTATTCAGCTCGCTCTATTGTGAGCAGCGGTGCTAATTGCAGTCTGAATGAGCTGCCCCCACAGAGTGCCCTGGCAGCCCAGTATGAGAATATATCCCTCAATCGCAGTGCCACTACAGCCTCTACCAACAGCTGCAGCGGCTGGGATCCACTGATTATTGACGAGCGCGATACGGAGGCGTGGCCTTCCATTTCATGCAAAGAAAGCCACGCCCCTGCAGGATGCCCCTTGGACACTGAAAGTATCAGTGACATCAGCAGCATGAGCATGGCCACAGGAGCTGGCCAGCAAGGCCATTTCTCAGCCAATCACCCCAGCAAAGCCAATGCCAGCCACTCAGGAGGTCTGCTCTCTAGTGGGGCCAGCAGAGGCTGGGGCTCTGGCCCTTCTCCTGCCAGTGGAGGAGAAGGGAAGAATGAAGTCTCCAGCACATCAGTGGGAACCAGGGGTTGGGGCTCATCCAACTTTAACTTGAACTTAAACCCCAACGCCAACCCCTCTGCCTGGCCAGTTTTGGGACATGAAGGGACCGGCATGGGTGGCGGCAGCTCTGGAGGAAACAACCCTCCTCCTCCTACTCTCTGTAGCCCACCGGGCACTTTGCCCAGCCAGGGCTCTAGCAGCAGTGGCAGTATGGGTGGTGCCAATGGAAATTCTGCAGGTAATGGTGGCAGTGGCAATGGCAGCACCACATGGGGTAGCATTGTGCCCAGTGACTCCTCAGAGCCACACTCCACCCCATCCACGAATGTGTCTTTCAGCTCCGAACCTCAGAACCTTAACACTGATGGACCAAATCACACTAAGCAGGAGCCCAGAAGCCCAGGCCACAGCCTGCCTAACTGGGGGGTTGGCCCTGCAGGCATGGGCTCGTTTGTTCAAACTCCAGGAGGAGCCTCGCAAGTCAATGGAGATGAGGAACCTGTTTGGGGTAATGGAGATACCAAGTCTGGTGGTGGCTCAAAAGACTCTGGTTGGGACTCAGGGAGCAGCTGGGGACAAGGTGGGGCCTCAGGCACTTCTGGCTGGGGACAAGCTGCCTCAACTGGGGACTGGGGTAAGCATTCCAACAGTGAGGCAAAAGGATGGGATTCTTCAAGCTCTCCCACTCAAGAGCAGCAGCACAATTCTTGGGTCCGTGGGGCCAATGCTACAGCTAGTGAGGGAAGCAGTGACAGCATGGAATGCCGTCCTCGAAGGAGGGACCGCTCATCAAGAGATGAGGCTCCCCCTATTCTGCCAGCCCAGGATATGGACCCTCGGGTTCTGTGCAACACAGGCTGGGGACAAACACCAGTGCGGCAGCACACAGCTTGGGAGACCGAAGAAGCTGCACGCTCCAACCGCAAGAATGACATTGGAACTGATGCCTGGGGCTCATCCTCAAATGCAGCCAATCTAGGACCAACACCAACTTCTGGCAGTGCCAACCCAAACTCAGGCACTACATCCAGACCTGACTCTGGAGGCAAGAATGAGGGCCCATGCCCTAGTACTGGAGCTACATCTGGATGGGGCACAGCTATGCCATCACCCCAGGTTAGCTCTGGTTGGACTGATTCAACCAGCAACAAGAAACCTTCCAATGGTCCTGGAAGTTGGAGCAGTACCCCAGCCGGAGGCCCAGGTGGCAGCCTGCAGAAAAGTGGTCAGACTTGGGGTTCAGAGGAGAAGTCTCCTACCTGGGAAGACAGTCACGCTAAAGTCAAACCACAGGGCTGGGGTGAGGGGCCCAAACCATCTCACGGATGGGGTAATGGACCTGGTGGAGAAAGTGGGTCTGGAGGAGAATGGGGTGAACATGGAGATGGAAAGAAAAATGGTCCCTCCAGCTCTACCTGGGAGGGAGAGGGTACCAGCTGGAACGAGGGCTCCAGGGGTTGGGCAAAGCCTACTTCAGGAGTAGGGGGAAACTGGGGAGATGCACAACGACCCAGTGTGTCACAACAAGGATGGAATAAGCCTCAGGAGGGCACCAATGGCAATAGTGGCAGTGGAAGCATGGGTTCTTGGGGAGGTCCTAGCTCTGTAAAGCAGAGTGGCTCTGGGTGGGGTGGAGGAAATGGTGGAGGTGTTAAACCTGACCATACTGGAGAGCCCACTGGATGGGAGGAGCCCTCTCCACCCTCCGTCCGTCGTAAGATGGAGATCGATGACGGTACCTCAGCTTGGGGTGACCCAAGCACTTGCAACAAGACAGTCAATCTCTGGGACAGGAATAACCCTGGGATGCAAGGCAAATCAGGACCTGGCAATGCCAACAATGTACCCAACAACCATCATCATCATCCCCACCATAACCAGCCTCCCGTGCAGGCTCACAGCCATGGAGGGCCAAACTCAAACAATAATAACATTTCCCCTGATAACGCTGGCCCACATCAAACGGGACCGCCTCACAATAGAACAACCCTCATGAATCCAGGATGGAGTGAGATGACAAATGTCCATTCAAAACCTGAGCCCTCATGGGGGGAGCCAGCCACCCCTGCAGCAAGTGTGGACAATGGCACTTCAGCATGGGGCAAACCCCCAGGTGGTTGTGGCAGCTGGGGTGATAATGGCCCTGAGGTCTATGGTCGAGGCAACGGACCCCCTGGATCTGCCCCCTGCAAACCTGCCCCAAAATCTATGCAAGATGGCTGGGGAGGTGGTGAGGACATGGGCCTGTCTGCAGGGCAGTGGGAGCAGGATGAGAGTGACATGTGGAACAGCACTGCATCTCAGGAGAGCAACTCCTCCTGCAGTTCCTGGGGCAACCCACCCAAAAAGGGCCCACCAAAGGGAAAAGTCCCAAATAAACAGGATGATACCTGGATAATGAATCGTCTCATCAAGCAGCTGACTGACATGGGCTTCCCTAGAGACCCTGCAGAAGAGGCTCTCAAGAGCAACAACATGAACTTGGATCAGGCCATGAGCGCCCTTTTGGAGAAGAAGACCGAACTAGATAAACGGGGGATGGGAATCTCTGACTACAACAACGGCTTAGTCAATAAACCAATGGGATGCAGGCCTTCAGTCATCTCCAAAGAATCCTCTTCAGATCGCCCCCCCTTCTTGGACAAGGATGCTGGGCTAGCAGATGATGCCCAAACCTCACCGTTTATGCCTTCTCCGAGCCTGAAGCTCCCATTGGGTAGTGCTGCACTCCCTGGCCAGAGTCTTGGAGTTGCAATGCAAAACTTGAATAATAGACAGATGCAGAGTGGAGTGTTTGGTAGTAGCGGAGCAGCACAAGCCCGGGCCCTGCAGCAGCAGCCTCCTCCCCAGCCGTCAGTGCCACCTCTCAACTCGTCCCAGCCTAGTCTACGCGCTCAAGTGCCTCAGTTTCTCAGCCCTCAGGTTCAAGCACAGCTTTTACAGTTTGCAGCAAAAAACATTGGTCTCAACCCTGCACTTTTAACCTCACCAATAAACCCTCAGCATATGACCCTGTTGAACCAACTTTATCAGCTGCAACTGGCGTACCAGCGTTTACAAATTCAGCAGCAGATGTTGCAGGCACAGCGCAGTGTTTCTGGCCCCATCCGTCAGCAAGAGCAGCAAGTTGCACGTACAATCAATAACATGCAGCAACAGATCCAGCAGCACCAGCGGCAGCTGGCTCAGGCTCTGCTGATGAAACAACAGCAGCAGCAGCCACCCCCCTCACACCCGGGCCTGCATCCCAGCATAGGCAAATCAGCTCTGGACACATTTCCATCCCATCCCCAGGTCTCCAGCCTCTCTGTTTCCGACCTTCAGACCAAAGAGCCACAGTCTTCTCCAAACTCCTTCTCACCCTACCCTATTTCTGGATTGAACCCCAACATGAATGTAAACTGCATGGAGGTGGGTGGCCTCTCCATTAAGGACTCTCCTCAGCCTCAGTCACGCCTATCACAGTGGACACACCCTAACTCCATGGAGAATCTATCTGGCAACTCCTCTCCTATGGAGCCCAATTTCAGCAAGCATGGTGCCATCTCTGCAGGCCCCAATCTGGGTCCCCCTAGTAAGCCCCAGCTGGACGACTCCTACAGTCCCTACAATCTGATTTCAAGCTCCGAGTCTCCTGCCAGCCCTCTGGCACCTCATGATAGCTGGGGCCAGGGAAAGAACAACAATGACAAGATCTCCAATGGGACTAATGTCAACTGGCCTCCAGAGTTTTGTCCAGGAGTGCCCTGGAAAGGACTGCAGAATATTGACCCTGAGACTGACCCCAATGTAACTCCAGGGAGTGTTCCCAGTGGGCCCACCATCAACACCAACATTCAGGATGTTAACCGCTACCTGCTGAGAGACAGGAGTGGAGGCAAGCTATCTGACATGAAGTCCACTTGGTCCCCAGGGCCCATCTCACACACCCAGCCTTCTCTCTCTCATGAGCTTTGGAAAGTTCCACAAGGACCCCGGAACACAACAGCTCCCACACGGCCACCTCCGGGCCTGACCAACACCAAGCCCTCGTCCACGTGGGGCGGAAACACCCTGGGCCTCGTGGCTGGCTGGAGCAGCTCCTACTCCTCAGGTACCACATGGAGTACAGACAGCTCCAGCAGGAGCACTAGCTGGTTGGTTTTGAGAAACCTCACACCTCAGATTGATGGCTCAACACTGCGGACACTGTGCATGCAGCACGGCCCGCTAATCACATTCCACCTCAACCTGACACAGGGCAATGCCGTGGTGCGCTACAGTTCTAAAGAGGAGGCTGCCAAAGCCCAGAAGTCCCTACACATGTGTGTTCTGGGAAACACCACTATACTGGCAGAGTTTGCTGGAGAAGAGGAGGTGAACCGCTTCTTTGCACAGGGTCAGTCCCTTACGCCCACCACCAGCTGGCAGGCCAACCCCGGCACCAATCAAACTCGGCTGGGAGGCGGAGGGACGGCGGCCACACACCCCATCGGCCACTGGAACAGCAGCAGTCTGGGAGGAGGAGGAGCAGGCGGGACAGGGTCCGGCGGTAAGGCAAGCAACGAGCTGCTGTGGGGGGGCGTACCGCAGTACTCCAGCCTGTGGGGCCCGCCCAGCGCGGAGGACGGTCGAGTGGTCGGCAGCCCCACCCCAATCAATACGCTGCTTCCTGGAGACCTGCTGAGCGGAGAGTCCATGCTTGGATTACAGTATTCTATAGACTTCTTACGAAGATCCGTGACTAAAAGAGAAGTGAACCTTTACAGAAACGTTTCTCTATTAACTGATACCAGTGTGAAAGTGTATTTTACTACAAACCGATGAGACAAGCTGCCATTGTTTTAAATTCCTCTGGCACGAGTACATCTTGTCAGCCCTATCACAGCATATTGCCCTCTCCCCGAAGAAATATGCGTCATTCCAAACTAATTCACTCCCTGTGTTTTGGACTGGCTTTTTTTTTTTTTTTTCTTCATTTGTCCTTTGGATCGTTTGGATTAATTAA

Function

symbol description
tnrc6c1 Predicted to enable RNA binding activity. Predicted to be involved in gene silencing by miRNA and positive regulation of nuclear-transcribed mRNA poly(A) tail shortening. Predicted to act upstream of or within miRNA mediated inhibition of translation. Predicted to be active in P-body and nucleoplasm. Orthologous to human TNRC6C (trinucleotide repeat containing adaptor 6C).
tnrc6c Predicted to enable RNA binding activity. Involved in gene silencing by miRNA; positive regulation of nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay; and positive regulation of nuclear-transcribed mRNA poly(A) tail shortening. Predicted to be located in cytosol. Predicted to be active in P-body and nucleoplasm.

GO:

id name namespace
GO:0035278 miRNA mediated inhibition of translation biological_process

KEGG:

id description
K18412 TNRC6, GW182; trinucleotide repeat-containing gene 6 protein

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000069_05100248_05121420.mRNA True 5856 mRNA 0.55 22 5100067 5121420

Neighbor

gene id symbol gene type direction distance location
CI01000069_05042346_05044105 NA coding downstream 54832 5042275 ~ 5045235 (-)
CI01000069_05025745_05032197 YIPF2 coding downstream 67870 5025297 ~ 5032197 (-)
CI01000069_04996783_05001227 CLPP, CLPP.L coding downstream 98840 4996340 ~ 5001227 (-)
CI01000069_04985959_04986408 NA coding downstream 113659 4985693 ~ 4986424 (-)
CI01000069_04983344_04983640 IGHV4-2 coding downstream 116427 4983322 ~ 4983640 (-)
CI01000069_05227862_05278522 SEPT9A coding upstream 106442 5227862 ~ 5278522 (-)
CI01000069_05321785_05324036 NA coding upstream 199851 5321271 ~ 5324097 (-)
G276078 NA non-coding downstream 3081 5094118 ~ 5096986 (-)
G276103 NA non-coding downstream 10490 5086117 ~ 5089577 (-)
G276193 NA non-coding downstream 40499 5059333 ~ 5059568 (-)
G276107 NA non-coding downstream 90594 5004379 ~ 5009473 (-)
G276071 NA non-coding downstream 307264 4791382 ~ 4792803 (-)
G276095 NA non-coding upstream 16938 5138358 ~ 5152509 (-)
G276200 NA non-coding upstream 33616 5155036 ~ 5155302 (-)
G276203 NA non-coding upstream 37288 5158708 ~ 5158935 (-)
G276204 NA non-coding upstream 37983 5159403 ~ 5159718 (-)
G276207 NA non-coding upstream 45612 5167032 ~ 5167723 (-)
CI01000069_04932463_04940554 NA other downstream 157868 4932144 ~ 4941471 (-)
CI01000069_03804630_03807180 PRMT1.S, PRMT1 other downstream 1292990 3804616 ~ 3807180 (-)
CI01000069_03768812_03787588 BRSK1 other downstream 1330847 3765673 ~ 3787588 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
bowfin (Amia calva) AMCG00013329 tnrc6c,LOC107724432 coding CM030125.1 CM030125.1 28464362 ~ 28483978 (+)