Gene
RNA
| Item | Value |
|---|---|
| gene id | G275681 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000069 |
| NCBI id | null |
| chromosome length | 5329268 |
| location | 2768956 ~ 2769312 (-) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU312773 | True | 357 | lncRNA | 0.37 | 1 | 2768956 | 2769312 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000069_02680931_02718828 | SHANK1 | coding | downstream | 50128 | 2680931 ~ 2718828 (-) |
| CI01000069_02652051_02660623 | NA | coding | downstream | 108333 | 2650793 ~ 2660623 (-) |
| CI01000069_02589498_02621318 | SYT3 | coding | downstream | 147315 | 2589469 ~ 2621641 (-) |
| CI01000069_02563632_02574422 | MED25 | coding | downstream | 194534 | 2562879 ~ 2574422 (-) |
| CI01000069_02503984_02508234 | LRRC4BA, LRRC4B | coding | downstream | 260198 | 2503453 ~ 2508758 (-) |
| CI01000069_02781134_02792831 | SUV420H2 | coding | upstream | 11087 | 2780399 ~ 2792831 (-) |
| CI01000069_02801133_02811021 | PPP1CA.L, PPP1CAA, PPP1CAB, PPP1CA, PP1G, PPP1CC | coding | upstream | 31053 | 2800365 ~ 2811214 (-) |
| CI01000069_02822758_02831326 | NA | coding | upstream | 53178 | 2822490 ~ 2831326 (-) |
| CI01000069_02839630_02842415 | PAQR4, PAQR4A | coding | upstream | 69855 | 2839167 ~ 2842486 (-) |
| CI01000069_02865724_02867576 | NA | coding | upstream | 96389 | 2865701 ~ 2867576 (-) |
| G275672 | NA | non-coding | downstream | 128422 | 2640335 ~ 2640534 (-) |
| G275671 | NA | non-coding | downstream | 128918 | 2639787 ~ 2640038 (-) |
| G275670 | NA | non-coding | downstream | 129207 | 2639512 ~ 2639749 (-) |
| G275629 | NA | non-coding | downstream | 282165 | 2485737 ~ 2486791 (-) |
| G275610 | NA | non-coding | downstream | 375572 | 2391983 ~ 2393384 (-) |
| G275658 | NA | non-coding | upstream | 123426 | 2892738 ~ 2894966 (-) |
| G275843 | NA | non-coding | upstream | 450497 | 3219809 ~ 3220041 (-) |
| G275856 | NA | non-coding | upstream | 491984 | 3261296 ~ 3261504 (-) |
| G275814 | NA | non-coding | upstream | 511600 | 3280912 ~ 3284191 (-) |
| G275772 | NA | non-coding | upstream | 537177 | 3306489 ~ 3312896 (-) |
| CI01000069_01645966_01647142 | NA | other | downstream | 1121630 | 1644522 ~ 1647326 (-) |
| CI01000069_00952894_00955774 | NA | other | downstream | 1813166 | 952361 ~ 955790 (-) |
| G275178 | NA | other | downstream | 1823152 | 926923 ~ 945804 (-) |
| CI01000069_00041648_00043198 | EHD3 | other | downstream | 2725584 | 41648 ~ 43441 (-) |
| CI01000069_02997434_03008924 | NA | other | upstream | 219714 | 2997275 ~ 3008924 (-) |
| G275699 | NA | other | upstream | 223192 | 2992504 ~ 3078168 (-) |
| CI01000069_03415853_03417644 | LIMD2 | other | upstream | 643661 | 3412973 ~ 3417644 (-) |
| CI01000069_03768812_03787588 | BRSK1 | other | upstream | 996361 | 3765673 ~ 3787588 (-) |
