Gene
RNA
| Item | Value |
|---|---|
| gene id | G275658 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000069 |
| NCBI id | null |
| chromosome length | 5329268 |
| location | 2892738 ~ 2894966 (-) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU312750 | True | 1066 | lncRNA | 0.43 | 2 | 2892738 | 2894966 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000069_02865724_02867576 | NA | coding | downstream | 25162 | 2865701 ~ 2867576 (-) |
| CI01000069_02839630_02842415 | PAQR4, PAQR4A | coding | downstream | 50252 | 2839167 ~ 2842486 (-) |
| CI01000069_02822758_02831326 | NA | coding | downstream | 61412 | 2822490 ~ 2831326 (-) |
| CI01000069_02801133_02811021 | PPP1CA.L, PPP1CAA, PPP1CAB, PPP1CA, PP1G, PPP1CC | coding | downstream | 81524 | 2800365 ~ 2811214 (-) |
| CI01000069_02781134_02792831 | SUV420H2 | coding | downstream | 99907 | 2780399 ~ 2792831 (-) |
| CI01000069_02895817_02903000 | NA | coding | upstream | 724 | 2895690 ~ 2903000 (-) |
| CI01000069_02906527_02909006 | NA | coding | upstream | 11083 | 2906049 ~ 2909006 (-) |
| CI01000069_02911501_02921826 | TCEB2, ELOB, TCEB2.L | coding | upstream | 16515 | 2911481 ~ 2922687 (-) |
| CI01000069_02934862_02943383 | ARL6IP1 | coding | upstream | 39126 | 2934092 ~ 2943383 (-) |
| CI01000069_02944962_02977798 | SMG1 | coding | upstream | 49867 | 2944833 ~ 2977798 (-) |
| G275681 | NA | non-coding | downstream | 123426 | 2768956 ~ 2769312 (-) |
| G275672 | NA | non-coding | downstream | 252204 | 2640335 ~ 2640534 (-) |
| G275671 | NA | non-coding | downstream | 252700 | 2639787 ~ 2640038 (-) |
| G275670 | NA | non-coding | downstream | 252989 | 2639512 ~ 2639749 (-) |
| G275629 | NA | non-coding | downstream | 405947 | 2485737 ~ 2486791 (-) |
| G275843 | NA | non-coding | upstream | 324843 | 3219809 ~ 3220041 (-) |
| G275856 | NA | non-coding | upstream | 366330 | 3261296 ~ 3261504 (-) |
| G275814 | NA | non-coding | upstream | 385946 | 3280912 ~ 3284191 (-) |
| G275772 | NA | non-coding | upstream | 411523 | 3306489 ~ 3312896 (-) |
| G275876 | NA | non-coding | upstream | 462255 | 3357221 ~ 3357421 (-) |
| CI01000069_02589498_02621318 | SYT3 | other | downstream | 262422 | 2589469 ~ 2621641 (-) |
| CI01000069_01645966_01647142 | NA | other | downstream | 1245412 | 1644522 ~ 1647326 (-) |
| CI01000069_00952894_00955774 | NA | other | downstream | 1936948 | 952361 ~ 955790 (-) |
| G275178 | NA | other | downstream | 1946934 | 926923 ~ 945804 (-) |
| CI01000069_00041648_00043198 | EHD3 | other | downstream | 2849366 | 41648 ~ 43441 (-) |
| CI01000069_02997434_03008924 | NA | other | upstream | 94060 | 2997275 ~ 3008924 (-) |
| G275699 | NA | other | upstream | 97538 | 2992504 ~ 3078168 (-) |
| CI01000069_03415853_03417644 | LIMD2 | other | upstream | 518007 | 3412973 ~ 3417644 (-) |
| CI01000069_03768812_03787588 | BRSK1 | other | upstream | 870707 | 3765673 ~ 3787588 (-) |
