G275828


Basic Information

Item Value
gene id G275828
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000069
NCBI id null
chromosome length 5329268
location 3614318 ~ 3633114 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU312924
TCCAGCCAAAATGTTTATTCATCAAATTCACAAGATTAAAACCAATGAGTGTACATTCAACAGTAAAGGCCTGATGACTACTTAAAAATCAAGACTATCTTTTATTAAATGACATTTACTAGATGTAACCATATAATGTCTTAGACTTTATACATTTTCATAAGTGCAAAAAATAAGCTTGATGATTTCGTCATGTAAGATGATCTGAGAGCTGCATTTAGCTTTCCAGGGTGTGCTTGTCAAACAGGTACTCCGCCATCCTGTTGTTGCCAGCATCCATCTTGGAAAGGTTGGTGATGTGGTCACCAAGCTTCTTGATGGCCTCAACCTGCTCATTCAGGTAGTGAGTCTCCAGAAAGTCACACATCTGTTGGACAAGACATCAGAAAACAATTTAGAATGCAAACTTCCCAGAAAAGATGTGATACTGTTTTTTTTTAAAAAAGCATGCAGGCTATATGGAGGCAGGCTTTTTAGAGAAGAAGAAAAAAAAAGAAAAGAAACAAATCGATAATAACAATGCCAATAAAAAAAAAAAAAGTAATACTAATAATAAA

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU312924 True 557 lncRNA 0.34 2 3614318 3633114

Neighbor

gene id symbol gene type direction distance location
CI01000069_03578433_03584741 BAXB coding downstream 29087 3578433 ~ 3585231 (-)
CI01000069_03571631_03573352 NA coding downstream 38575 3563293 ~ 3576335 (-)
CI01000069_03565665_03568486 NA coding downstream 45832 3565540 ~ 3568486 (-)
CI01000069_03506556_03507031 NA coding downstream 106761 3506255 ~ 3507557 (-)
CI01000069_03474790_03478425 RNF113A coding downstream 135893 3474790 ~ 3478425 (-)
CI01000069_03667639_03669979 NA coding upstream 34506 3667620 ~ 3669979 (-)
CI01000069_03670799_03677837 NA coding upstream 37157 3670271 ~ 3677843 (-)
CI01000069_03678617_03697993 PIH1D1 coding upstream 45184 3678298 ~ 3698756 (-)
CI01000069_03721128_03722393 NA coding upstream 87830 3720944 ~ 3722393 (-)
CI01000069_03739653_03764284 CPT1CB coding upstream 105336 3738450 ~ 3764284 (-)
G275878 NA non-coding downstream 253617 3360488 ~ 3360701 (-)
G275876 NA non-coding downstream 256897 3357221 ~ 3357421 (-)
G275772 NA non-coding downstream 301422 3306489 ~ 3312896 (-)
G275814 NA non-coding downstream 330127 3280912 ~ 3284191 (-)
G275856 NA non-coding downstream 352814 3261296 ~ 3261504 (-)
G275920 NA non-coding upstream 103540 3736654 ~ 3736958 (-)
G275921 NA non-coding upstream 104358 3737472 ~ 3737689 (-)
G275756 NA non-coding upstream 158475 3791589 ~ 3796952 (-)
G275790 NA non-coding upstream 190278 3823392 ~ 3826580 (-)
G275773 NA non-coding upstream 206120 3839234 ~ 3843586 (-)
CI01000069_03415853_03417644 LIMD2 other downstream 187944 3412973 ~ 3417644 (-)
G275699 NA other downstream 536150 2992504 ~ 3078168 (-)
CI01000069_02997434_03008924 NA other downstream 613885 2997275 ~ 3008924 (-)
CI01000069_02589498_02621318 SYT3 other downstream 984002 2589469 ~ 2621641 (-)
CI01000069_03768812_03787588 BRSK1 other upstream 132559 3765673 ~ 3787588 (-)
CI01000069_03804630_03807180 PRMT1.S, PRMT1 other upstream 171502 3804616 ~ 3807180 (-)
CI01000069_04932463_04940554 NA other upstream 1306407 4932144 ~ 4941471 (-)

Expression


Co-expression Network