Gene
RNA
| Item | Value |
|---|---|
| gene id | G275920 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000069 |
| NCBI id | null |
| chromosome length | 5329268 |
| location | 3736654 ~ 3736958 (-) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU313017 | True | 305 | lncRNA | 0.45 | 1 | 3736654 | 3736958 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000069_03721128_03722393 | NA | coding | downstream | 14261 | 3720944 ~ 3722393 (-) |
| CI01000069_03678617_03697993 | PIH1D1 | coding | downstream | 37898 | 3678298 ~ 3698756 (-) |
| CI01000069_03670799_03677837 | NA | coding | downstream | 58811 | 3670271 ~ 3677843 (-) |
| CI01000069_03667639_03669979 | NA | coding | downstream | 66675 | 3667620 ~ 3669979 (-) |
| CI01000069_03578433_03584741 | BAXB | coding | downstream | 151423 | 3578433 ~ 3585231 (-) |
| CI01000069_03739653_03764284 | CPT1CB | coding | upstream | 1492 | 3738450 ~ 3764284 (-) |
| CI01000069_03768812_03787588 | BRSK1 | coding | upstream | 31634 | 3765673 ~ 3787588 (-) |
| CI01000069_03804630_03807180 | PRMT1.S, PRMT1 | coding | upstream | 67672 | 3804616 ~ 3807180 (-) |
| CI01000069_03871972_03884153 | NA | coding | upstream | 134967 | 3871925 ~ 3884153 (-) |
| CI01000069_03939251_03942780 | RCN3 | coding | upstream | 202246 | 3939204 ~ 3943095 (-) |
| G275754 | NA | non-coding | downstream | 100391 | 3612753 ~ 3636263 (-) |
| G275828 | NA | non-coding | downstream | 103540 | 3614318 ~ 3633114 (-) |
| G275750 | NA | non-coding | downstream | 108900 | 3595721 ~ 3627754 (-) |
| G275826 | NA | non-coding | downstream | 121815 | 3607452 ~ 3614839 (-) |
| G275878 | NA | non-coding | downstream | 375953 | 3360488 ~ 3360701 (-) |
| G275921 | NA | non-coding | upstream | 514 | 3737472 ~ 3737689 (-) |
| G275756 | NA | non-coding | upstream | 54631 | 3791589 ~ 3796952 (-) |
| G275790 | NA | non-coding | upstream | 86434 | 3823392 ~ 3826580 (-) |
| G275773 | NA | non-coding | upstream | 102276 | 3839234 ~ 3843586 (-) |
| G275827 | NA | non-coding | upstream | 111623 | 3848581 ~ 3848979 (-) |
| CI01000069_03415853_03417644 | LIMD2 | other | downstream | 310280 | 3412973 ~ 3417644 (-) |
| G275699 | NA | other | downstream | 658486 | 2992504 ~ 3078168 (-) |
| CI01000069_02997434_03008924 | NA | other | downstream | 736221 | 2997275 ~ 3008924 (-) |
| CI01000069_02589498_02621318 | SYT3 | other | downstream | 1106338 | 2589469 ~ 2621641 (-) |
| CI01000069_04932463_04940554 | NA | other | upstream | 1202563 | 4932144 ~ 4941471 (-) |
