G276107


Basic Information

Item Value
gene id G276107
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000069
NCBI id null
chromosome length 5329268
location 5004379 ~ 5009473 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU313229
ACTTAAAGGGGTCATGAATTGAGAAATCAAAATTTCCTTGATCTTTTGACATGTAAGAAGTCATTATACCATTGTTGCACTATAAAAAGTAAGTTTCAGAACTCAAGTTTGTCCAAAAACAACTTTTGTTGAAACCAAGCTCAGAAAACGTCTAGTTTTGGATTTTGTCACATTGTGACATAATAGTGCAACTAAAGAAAGAAAATCATTGCCTACTTCTACATCTTTGGCCCCACCCACTGACACATTAGTAAGATGAAAAGGACAGAAGAGAGATACAGGATCACCAGATTAAAAATAACATTACTTTCCAAATTATCCTAATGCTAGAAAAGTGGTTATTTATTTTCAACTACGCGAATGTCTCAGTAGACCATTATTTGTTTGTTCAGTACATTTCACTGTGGATTCTTTGGTAAATCAGTCGCAATTTCGGTGCAGGCTTTGCAAACAGACTTCTACTGTAAGATATAAACCCGACAGTAATGACACAATATGTAACCGTGTTAATTCTAATGCCTAATCTGTGATCAGTGGTTTCTGATATGTAATGATTCATGTACAGTCAGATGTCATCATTTATAGCCATTTATGCATCAGTAAATCAAGCCAGTGACTAAACTAACTTCACATTATTTGTTTTAGTTACATGAAAATAATCTAATTTAAATTGCAATTAAATTGTATATAGAAAGCGATCAAAGTACGCTCCCTTTATAATCACTGGAGCTATCAATCACACAGTGACTGAGTTCTGGACTCTCGCCTATAATCAATGATGCTGTCTACACTGCACAATGAATCTCTTATTTACATCGCGTTTGCACTGTTAGTTATGAAAGCATTCATGAGAGTGCAGAAAAACTGAGTTGCATTGACGAGATCACTCCATTCATGCGCTCAACAAACATGTCTGTCATCGGCTACAATGCTCATCGCTGCAACCTTTCATATGACGGAGCAGATCTAAATATAATGCTATAATCAACACTTTTCGCAATTAATCTTGACAGCTGTAACAGAAAGTTTGAGAGAAGTTCCACGTGTAATACTTATTTCATATGCAAAGATGTTAGCCAATCATAGCAGTGGGCCTTAACATTGAAATCTCACAGCAGACAGGTCCCTTTAAAATCAGAGGGCTAAAATCAGGGTAGAAAATGGCCTTTTATTTCTAAATTGACCATTTTTGGTCTTTTAATCATATAAACACTATAAGTGCACCTTAAGAAACACTACAAAATAACATAAAATTGCAGTTCATGACCCCTTTAACAGTACAAAGAGAGAAATAACAGTACTTTATCCTTGAAGTCAGTATGATTCTGGAGGATGGCTCGTTGATATGTTCCAGTTCGCACATAATCCTGCATCATGTTTTGTTGCTGAGAGAGGTAGCCATAAAACTGGAAATACTGTACAGCTGAGGACTCCTCCGTCCTCTCACTGAAGACCGAACGTTCGCCCCTGTGTCCACGGCAATTCTTCAGAAGGTTATAGAATGATGAGAAATCTGCTGGAGATGCAAACTGCAGGAGGACACTGTTACAGCCCAGAGTAATGATGAAGGACTGCTTCCCAACACGACTGCATTCTGTCTCCCGTGATACTGAACACTTAAAGACGCATGTCTCCTCATTGTTCGAGAGGCTTATGAGAGCCGCGTCCTGGTTGGTTTTGATCTCTAGTCGCAGAGGCTGCTGCTCTGAATGTCGCTGTATGTCTCCATTGGCGTCTCCGATGGAGAGGAGGCGCACGCCTGAGAACACGGACACCGCCATCTTCGATCTGGGGAGAGTCATGCAGGCAGCTCGCAGCGGCTCAGATCTCCCCCGGAGTCAATGGTCAAGATAGGCCTGACTTACTACTGCCTCCACATGGCCACATCTTTTTTTCCCCCAGCTGTAGTTCAATTTCAAGGCATGATATGGGTTACTAAGAAAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU313229 True 1944 lncRNA 0.40 4 5004379 5009473

Neighbor

gene id symbol gene type direction distance location
CI01000069_04996783_05001227 CLPP, CLPP.L coding downstream 3152 4996340 ~ 5001227 (-)
CI01000069_04985959_04986408 NA coding downstream 17971 4985693 ~ 4986424 (-)
CI01000069_04983344_04983640 IGHV4-2 coding downstream 20739 4983322 ~ 4983640 (-)
CI01000069_04942590_04973602 NA coding downstream 30716 4942411 ~ 4973663 (-)
CI01000069_04932463_04940554 NA coding downstream 63231 4932144 ~ 4941471 (-)
CI01000069_05025745_05032197 YIPF2 coding upstream 15824 5025297 ~ 5032197 (-)
CI01000069_05042346_05044105 NA coding upstream 32802 5042275 ~ 5045235 (-)
CI01000069_05100248_05121420 TNRC6C1, TNRC6C coding upstream 90594 5100067 ~ 5121420 (-)
CI01000069_05227862_05278522 SEPT9A coding upstream 218389 5227862 ~ 5278522 (-)
CI01000069_05321785_05324036 NA coding upstream 311798 5321271 ~ 5324097 (-)
G276071 NA non-coding downstream 211576 4791382 ~ 4792803 (-)
G276114 NA non-coding downstream 293417 4704052 ~ 4710962 (-)
G276094 NA non-coding downstream 300910 4699271 ~ 4703469 (-)
G276133 NA non-coding downstream 334568 4669332 ~ 4669811 (-)
G276129 NA non-coding downstream 338966 4665170 ~ 4665413 (-)
G276193 NA non-coding upstream 49860 5059333 ~ 5059568 (-)
G276103 NA non-coding upstream 76644 5086117 ~ 5089577 (-)
G276078 NA non-coding upstream 84645 5094118 ~ 5096986 (-)
G276095 NA non-coding upstream 128885 5138358 ~ 5152509 (-)
G276200 NA non-coding upstream 145563 5155036 ~ 5155302 (-)
CI01000069_03804630_03807180 PRMT1.S, PRMT1 other downstream 1197302 3804616 ~ 3807180 (-)
CI01000069_03768812_03787588 BRSK1 other downstream 1235159 3765673 ~ 3787588 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
bowfin (Amia calva) AMCG00008366 carm1,LOC106592975 coding CM030126.1 CM030126.1 44083 ~ 51509 (-)