CI01000071_04825708_04831021


Basic Information

Item Value
gene id CI01000071_04825708_04831021
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000071
NCBI id null
chromosome length 5214881
location 4825708 ~ 4831067 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000071_04825708_04831021.mRNA
ATGACAATTTCTGCAATAGTTCTTTATCTGATTCTTCTGTCGCATCAAACAGTGTCAGAGGAGCAGGTGCAGCAGAATGTTATCGTTGAGAAAGGCGAGAATACTATACTACAGTGTCATGACCAGCCCGTTAATGCGTCTTCAGTTCTTTATCATTGGAAGAAAGATGGAGTTATTGTTGCAACTCAAAACCCCTCGAAGCCATCGGAGCATCTTTCCATTTTAAACAATGGCTCTCTGAGGATCAGTGGCCTTCAGTATATTGATGAAGGCCTGTATACATGTGAATGCCAAACAAAGGATGACAGCTCATGGCAAACTCACTCAAACATCATGCTTCAAGTTGCCGATGGTCCAACAATCATATCACTGGACATAAGACCAGCAACTCTCCTAAAGAATGGAACATTATATGTCAATAAAAGTTCAGATGTGTATTTTAATTGCTCCAGTGTGTCTCGTCCCTCACAAAACTTGACATGGACAGTTGAAAATTTGGCGCAGGATAATCATAACAGGGCGTCTGGGAGCGAATCAACCCTTGAGTTCTCCATAAGCAGAATCCAGCCACTAGATCAAGGGATGTACACCTGTACATCCCAGAATACACTATCCAAGACAACTGTGAACAAGAGCCAGGAACTCCTCGTTTACTATGCTCCAGAGAGGCATCCGGAGTGCAGTTGGGAGGTGACAAAGGAACCATCGGATGTCTTGCTCATATGTACCTGGACTGAAGGTTACCCTGCGCCCACTCTGAGCTGGCACGAGGTCCTTGAAGAATCTGTAATAGCCAAGGGTCCCACGATCAACTTCACGTCCCAGGGGACAGAACGCTTGGAGATCCATGTAAATAGGTTTACATTGCACGAAAAAGAGGAAGTGAAGTGTACTGGACATCACGTGACTGGAGTGGAGAAATCCTGCTCCATTAACCTCAAGATGCCGTATCCAACTGGAGACCCCTTGGTAACAGCTCTGGACGGCAGTAATATCACCCTCAGCTGTATTGAGACCAGCTCTCTCCCACCAGCTAATACTGTCTGGAAGAAAAAGGACGAAGTCATCAACAACACTTCTAAATATAATGTGTCCAAAAATGGACCCACATACAAACTCACTATAATCAATGTAACAAAGGACGATGAAGGGGTCTACTACTGCTACAGTGAAAACCCCCTTGGTGCAAGAGAGCTGGAAGTGGTTCTAACTGTGAAGACCTCTGCAAGTAATGGAGGGGCCATAGTTGGCATCTTTGTCTCCATTTTGGTAATGATGATAGGAATCTCTGTCGGTGTGACCGTATATTCGAAGCGTGATAGAATTTGCATTGATGATGACAGAGGGGATGTACTGAGTTTAGTGGACTCAGACGACGAGGAAATTTTCCATGATTCTGTTCCACAACTCCCTCCGTTGACAAACGGACATGCGACCACACTCGTAGAGATTCACAGAATCCCATACAGTAAGTCAATGGCTTCCTGAATATTGTTCAGACTTTTGTGTTTAACGGGTTGTGTTGTGTTTAAAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000071_04825708_04831021.mRNA True 1534 mRNA 0.45 7 4825708 4831067

Neighbor

gene id symbol gene type direction distance location
CI01000071_04780189_04798898 AIFM3 coding upstream 26810 4780189 ~ 4798898 (+)
CI01000071_04751375_04752037 NA coding upstream 73266 4751169 ~ 4752442 (+)
CI01000071_04737911_04747060 LZTR1.L, LZTR1 coding upstream 77824 4737421 ~ 4748342 (+)
CI01000071_04706607_04712020 P2RX2 coding upstream 113485 4706607 ~ 4712223 (+)
CI01000071_04589416_04602399 YPEL2A, YPEL2B, YPEL1, YPEL2, YPELD, YPELC coding upstream 223213 4588324 ~ 4602495 (+)
CI01000071_04834539_04839129 WSB2 coding downstream 3259 4834326 ~ 4839355 (+)
CI01000071_04851502_04865548 KSR2 coding downstream 20435 4851502 ~ 4865548 (+)
CI01000071_04903716_04959830 KSR2 coding downstream 72649 4903716 ~ 4959861 (+)
CI01000071_04982029_04982493 NA coding downstream 150289 4981356 ~ 4982540 (+)
CI01000071_05002535_05056745 NOS1 coding downstream 171122 5002189 ~ 5057408 (+)
G283442 NA non-coding upstream 1920 4822773 ~ 4823788 (+)
G283440 NA non-coding upstream 7479 4817956 ~ 4818229 (+)
G283401 NA non-coding upstream 106786 4715415 ~ 4718922 (+)
G282813 NA non-coding upstream 121800 4697875 ~ 4703908 (+)
G283423 NA non-coding downstream 131871 4962938 ~ 4965441 (+)
G283422 NA non-coding downstream 138001 4969068 ~ 4970189 (+)
G283457 NA non-coding downstream 151528 4982595 ~ 4989704 (+)
G283557 NA non-coding downstream 233565 5064632 ~ 5064913 (+)
G282080 NA other upstream 1769177 3056084 ~ 3056531 (+)
CI01000071_02815324_02834097 NA other upstream 1997104 2815127 ~ 2835525 (+)
CI01000071_01374449_01376813 NA other upstream 3448038 1373996 ~ 1377670 (+)
G280443 NA other upstream 3903612 905217 ~ 922096 (+)
CI01000071_00792254_00802384 SLC6A4B, SLC6A4 other upstream 4022391 791346 ~ 803317 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_030883 vsig10 coding NC_007116.7 CM002889.2 12562188 ~ 12587053 (-)