CI01000071_04834539_04839129 (WSB2)


Basic Information

Item Value
gene id CI01000071_04834539_04839129
gene name WSB2
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000071
NCBI id null
chromosome length 5214881
location 4834326 ~ 4839355 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000071_04834539_04839129.mRNA
TTATATAAAGCACATGGTACATGCATATGACAGTGTTGTATTTGGCAGCAGTAAGCATAAAACACGCCTTAACCCTGTAAATATATAGTAGAGACACACCTATAGTGCTCAGAATTATGCACAATCTACAATGGAGTCACGTGGTTCGCCCATAGTCAAATGAATGCCTGTGTAGAGGTGAGGCGGCGACGGGTAAGGTGATGTGATAAGAAGATGTGCACTTCGTCTCGAGGTTGTATTGTCGAAGAACCGCATGATCTGATCGCGGAGCTGAAACCCGCTCATCACCCGCGTCTGTACGGCACCGCCGGCTGCGAGACATGGAGCGTCCGCTTCTCCCCGGACGGATCTTATTTTGCCTGGTCGATGGGCTACGGCATCGTCAAACTCCTATCCTGGCCGCTGACATCCAAAGATAGTGCTGAAGCTGGATGCAGTGAAGAGAAGACGCTTAACTGCAGGCAGATGGTGTGGGCACTGGCGTTTGGACCCTGCCAGTCTATCCGTGTGGATGTTTTACATCAGAACGGACATGACCATGAACTACTGCTGGCCACTGGTCTGAACAACGGCGCAATCCAAGTGTGGGTCGTCTCAACTGGAAATCTGCGGTTTACTCTATCCGGACATGAGGCTCCTGTCAGGGATTTGGTCTTCACTCCAAATGGAAGTCTCACGCTTGTATCGGCCTCCCGAGACAAAACTTTAAGGATATGGGACTTGGCAAAGAAAGGCACCAGTCCTCATGTTCTGCGGGGTCCAAACTACTGGGTGTTTAGATGTTCCATATCACCTGACAGCAGTGTGATCGCCTCAGTTTGCAACCTCGACTCTAAGGTGTATTTGTGGAGCTTGCGGTCTTACACCTTCATGAGACACCTTACATATGACCACGAGCGCACCATGGCATCATGTGACTTTTCCCAGGATGGAGCTCTGCTCGCGGTCGCGTCGTACCATTCCAGCACAGGCTGGTGGCTGGACCTGTGGGACCCGTACACGGCAGATCACCTGACTAGAGTAGAAGACTGTGAGGTGTGTGCTTACAGAAGTGACAATTTACTGACATCTCTGAGCTTCTCTCCTGTTGGCCTGCTGCTAGCTTTCAAAGACTACAGGGCGTTACAGATCTGGGATGTGGAACGAGATAAACTAGTCGCTGACACCGATCACGGCCGCACTGGTGGTGTGTGCTGTTCTTTCCATCCACACGGGGGCGTCATTGCTACAGGGTGCAGAGATGGACAAGTAAAATTCTGGAGAGTTCCTCGTCTTGTTCCAAGCCTTAGGCATCTGTGCAGGGTTGCTCTGAGATTCTCGGTTTCAACCTATCAGGTGGAGGCTCTTCCCTTGCCCAAAAAAATCCTGGAATACCTTACATATAGGGACGTTCCAAAGCAAAAGATCATATATTGTAAAGACCACTGCAGTTGACTGAAAACAAGTAATGTTTGTGGGTCAGACTTTGCTTTAGATGTTGCATAATTTTCTAAGATGCCTAATTTCCCCAGACAGTTATGCTTTCAAAACAAAGAAACATTAAATTATGATGCTATACATGAAATATTTATTTAAAGACTTTTATTTTTTACATAACTACTTTGAAAATGTAGCATTTGTTGTACAAAGAACTGAGACAACTTTTATTTTAAGCATAAAA

Function

symbol description
wsb2 Predicted to be involved in protein ubiquitination. Predicted to act upstream of or within intracellular signal transduction. Orthologous to human WSB2 (WD repeat and SOCS box containing 2).

GO:

id name namespace
GO:0016567 protein ubiquitination biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000071_04834539_04839129.mRNA True 1660 mRNA 0.47 9 4834326 4839355

Neighbor

gene id symbol gene type direction distance location
CI01000071_04825708_04831021 NA coding upstream 3259 4825708 ~ 4831067 (+)
CI01000071_04780189_04798898 AIFM3 coding upstream 35428 4780189 ~ 4798898 (+)
CI01000071_04751375_04752037 NA coding upstream 81884 4751169 ~ 4752442 (+)
CI01000071_04737911_04747060 LZTR1.L, LZTR1 coding upstream 86442 4737421 ~ 4748342 (+)
CI01000071_04706607_04712020 P2RX2 coding upstream 122103 4706607 ~ 4712223 (+)
CI01000071_04851502_04865548 KSR2 coding downstream 12147 4851502 ~ 4865548 (+)
CI01000071_04903716_04959830 KSR2 coding downstream 64361 4903716 ~ 4959861 (+)
CI01000071_04982029_04982493 NA coding downstream 142001 4981356 ~ 4982540 (+)
CI01000071_05002535_05056745 NOS1 coding downstream 162834 5002189 ~ 5057408 (+)
CI01000071_05081168_05081463 NA coding downstream 241813 5081168 ~ 5082153 (+)
G283442 NA non-coding upstream 10538 4822773 ~ 4823788 (+)
G283440 NA non-coding upstream 16097 4817956 ~ 4818229 (+)
G283401 NA non-coding upstream 115404 4715415 ~ 4718922 (+)
G282813 NA non-coding upstream 130418 4697875 ~ 4703908 (+)
G283423 NA non-coding downstream 123583 4962938 ~ 4965441 (+)
G283422 NA non-coding downstream 129713 4969068 ~ 4970189 (+)
G283457 NA non-coding downstream 143240 4982595 ~ 4989704 (+)
G283557 NA non-coding downstream 225277 5064632 ~ 5064913 (+)
G282080 NA other upstream 1777795 3056084 ~ 3056531 (+)
CI01000071_02815324_02834097 NA other upstream 2005722 2815127 ~ 2835525 (+)
CI01000071_01374449_01376813 NA other upstream 3456656 1373996 ~ 1377670 (+)
G280443 NA other upstream 3912230 905217 ~ 922096 (+)
CI01000071_00792254_00802384 SLC6A4B, SLC6A4 other upstream 4031009 791346 ~ 803317 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_030882 wsb2 coding NC_007116.7 CM002889.2 12549551 ~ 12560569 (-)