CI01000071_05102723_05110135 (GATSL3)


Basic Information

Item Value
gene id CI01000071_05102723_05110135
gene name GATSL3
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000071
NCBI id null
chromosome length 5214881
location 5102723 ~ 5110220 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000071_05102723_05110135.mRNA
CTGTTTCCTCAGTGCTGACAAACCCCTGCGACTCTAGAGCAAAAACCTTTTCCTCTTCTCATAATCTGCAGGAAGGCAAAAACAACTATGTAGGAACAAAGTTTCAGAGGCAGTGTTTGTTTGCAGAGCTACAGCCGTCCGAGCACTTACAGGTTGAGGGCTCTACTTGGCTCCCGCTCAATGTCGTCTCCAATGGCAACGCCTCCAGCAGCTCACAGGCCGTGGGTGTCACCAAGATTGCCAAGTCCGTTATCGCTCCATTGGCCGAGCAGCATGTGTCAGTCTTCATGCTTTCAACCTATCAAACCGACTTTATTCTGGTGCGAGAGAAAGACTTGTCGGTGGTGGTGGACACTCTAGTGGAGGAGTTTAATATTTTCAGAGAAGAGGGGGGAGAGTCGGTGCCTGTCCACAGTCAGGATGCCTGCGACGGCCTTCAACGAAACGGAAGAGAGGTTCCACATGCAACAGTTCATCCGGTGCTGATTCCAGAGAATCATTTTTGCGTAATGAGTTTGGATCCGGATACTCTGCCAGCGATCGCCACCACACTCATAGATGTTCTGTTTTACTCTAACAGTCCCAAAGAGGGCGCCAGTGTTGATCAGGACATTGAATGTATCAAGTTCTTCTCCTTCTCTCTGATTGATGGATACATCTCCTTGGTGATGGACACAGAAGCCCAGAGACACTCCTCTGGTGAGCTCTGGAGGATGGTGAGAATAGGAGGGCAGCCTCTCGGCTTCGATGAATGTGGGATAGTTGCTCAGATCTCTCAGCCTCTTGCAGACAGTGATATATCAGCGTATTACATTAGCACCTTCAGCTTTGATCACGCTCTGAGCGACTCACAGCGCTTGCAGAGATGGAGTTTGTGAGAAGTAACATTTACTGTGAGTTTAAAGTGCATTCGTAAATGCAGTGTGTGCTATTCGCTTTACTTATTCCCAGTATTCCACCAAA

Function

GO:

id name namespace
GO:0005575 cellular_component cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000071_05102723_05110135.mRNA True 963 mRNA 0.49 8 5102723 5110220

Neighbor

gene id symbol gene type direction distance location
CI01000071_05082669_05087793 NIPSNAP1 coding upstream 14906 5082300 ~ 5087817 (+)
CI01000071_05081168_05081463 NA coding upstream 20570 5081168 ~ 5082153 (+)
CI01000071_05002535_05056745 NOS1 coding upstream 45315 5002189 ~ 5057408 (+)
CI01000071_04982029_04982493 NA coding upstream 120183 4981356 ~ 4982540 (+)
CI01000071_04903716_04959830 KSR2 coding upstream 142862 4903716 ~ 4959861 (+)
CI01000071_05142025_05161947 RNFT2 coding downstream 31805 5142025 ~ 5162294 (+)
CI01000071_05167170_05195192 FBXW8 coding downstream 56207 5166427 ~ 5195429 (+)
G283580 NA non-coding upstream 36716 5065791 ~ 5066007 (+)
G283557 NA non-coding upstream 37810 5064632 ~ 5064913 (+)
G283457 NA non-coding upstream 113019 4982595 ~ 4989704 (+)
G283422 NA non-coding upstream 132534 4969068 ~ 4970189 (+)
G283423 NA non-coding upstream 137282 4962938 ~ 4965441 (+)
G283570 NA non-coding downstream 3377 5113597 ~ 5115165 (+)
G283577 NA non-coding downstream 34542 5144762 ~ 5196867 (+)
G282080 NA other upstream 2046192 3056084 ~ 3056531 (+)
CI01000071_02815324_02834097 NA other upstream 2274119 2815127 ~ 2835525 (+)
CI01000071_01374449_01376813 NA other upstream 3725053 1373996 ~ 1377670 (+)
G280443 NA other upstream 4180627 905217 ~ 922096 (+)
CI01000071_00792254_00802384 SLC6A4B, SLC6A4 other upstream 4299406 791346 ~ 803317 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location