XLOC_001059 (chst12b)


Basic Information

Item Value
gene id XLOC_001059
gene name chst12b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 11641482 ~ 11642513 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00001704
ATCAGAATGCAGAAGCTCcatcacttttgttttcttttgggaGCGGTATTCATCACATTGTTTTTTATAGTAGTCTTCTGGGATGAGGTGAGAGTTGGAACTTACCAGCACATGGATTCATCAAAAAATCTGAAACAGCGTCAAGCACATCGTAAACATCTAATAAACAAGCTTTGTTTGGCCAATAGCAGCCTGCTTTTCCGAGATAAATTAATCACATTTGACCAGATTCCCAACAAAGCTCTGGATCATCTCATTGTGGACGATCGTCACCGTGTGATTTACTGTTTTGTACCCAAGGTAGCTTGTACTAACTGGAAGCGAGTAATGATTGTGCTCAGCCAGAACCTGAAGGCACCTGATGGAGCTCCATATCTGCATCCTCTTGACATACCAATAGAGGTAATCCATAATTCTACAGTGCATAAGACATTTAACAACTTATGGATCCACCATGGTCGATACGCTCGTCCTCTGATGCATCAAAAGCTGAAGAACTACACTAAGTTCCTTTTTGTACGGGATCCGTTCGTGCGCCTTATTTCTGCTTTTCGAGCCAAATTTAATAGGCCAGATGAGTACTTCTACTCCAATTATGGCTCCACAATGCTTCAGCGTTATGCTAATATTTCACACCCCCCTGCTTCGGCTCAAGAGGCCTTCAGTGCAGGTATCAGACTGTCCTTTACTCACTTTATTCAGTATCTGTTAGATCCACAGACTGAGAAGGAGAAGCCGTTTAATGAGCATTGGCAGCAGATTCACAGACTTTGCCATCCATGTCAAATTGACTATGACTTTATTGGGAAGCTAGAAACTCTTGATGAGGACACAGAACATTTGCTTAAGATTCTTGGACTGGATAAACATATTCACTTTCCTCCAGGAAATGAGAACAGGACTGCGGTAGACTGGGAGCGAGAATGGTTTGCAAACATTTCAGTAGCACACAGGAGAAAGCTGTACAGTCTTTATGAAACCGACTTTAAGTTATTTGGATATGATAAACCTGAGACACTTCTGAATGAGTga

Function

GO:

id name namespace
GO:0030166 proteoglycan biosynthetic process biological_process
GO:0005975 carbohydrate metabolic process biological_process
GO:0016051 carbohydrate biosynthetic process biological_process
GO:0005794 Golgi apparatus cellular_component
GO:0000139 Golgi membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0008146 sulfotransferase activity molecular_function
GO:0016740 transferase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-090312-144 Predicted to enable sulfotransferase activity. Predicted to be involved in proteoglycan biosynthetic process. Predicted to act upstream of or within carbohydrate biosynthetic process. Predicted to be located in Golgi membrane. Predicted to be integral component of membrane. Is expressed in central nervous system and pectoral fin. Orthologous to human CHST12 (carbohydrate sulfotransferase 12).

Ensembl:

ensembl_id ENSDARG00000094981

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00001704 True 1032 mRNA 0.42 1 11641482 11642513

Neighbor

gene id symbol gene type direction distance location
XLOC_001058 si:dkey-26i13.3 coding downstream 9848 11626252 ~ 11631634 (-)
XLOC_001057 si:dkey-26i13.5 coding downstream 25187 11615273 ~ 11616295 (-)
XLOC_001056 si:dkey-26i13.6 coding downstream 34420 11606010 ~ 11607062 (-)
XLOC_001055 si:dkey-26i13.7 coding downstream 44653 11595798 ~ 11596829 (-)
XLOC_001053 sdk1b coding downstream 121548 11124746 ~ 11519934 (-)
XLOC_001060 brat1 coding upstream 28366 11670879 ~ 11689525 (-)
XLOC_001061 NA coding upstream 50644 11693157 ~ 11695392 (-)
XLOC_001062 NA coding upstream 69030 11711543 ~ 11714363 (-)
XLOC_001063 ttyh3b coding upstream 139031 11781544 ~ 11850353 (-)
XLOC_001064 iqce coding upstream 212197 11854710 ~ 11878845 (-)
XLOC_001054 NA non-coding downstream 124129 11470790 ~ 11517353 (-)
XLOC_001051 BX004756.1 non-coding downstream 578835 11062524 ~ 11062647 (-)
XLOC_001050 NA non-coding downstream 703667 10936724 ~ 10937815 (-)
XLOC_001049 BX323090.1 non-coding downstream 771241 10870117 ~ 10870241 (-)
XLOC_001045 NA non-coding downstream 901041 10739165 ~ 10740441 (-)
XLOC_001067 NA non-coding upstream 422643 12065156 ~ 12068877 (-)
XLOC_001068 NA non-coding upstream 463134 12105647 ~ 12126625 (-)
XLOC_001072 NA non-coding upstream 794345 12436858 ~ 12441010 (-)

Expression


Co-expression Network