XLOC_001060 (brat1)


Basic Information

Item Value
gene id XLOC_001060
gene name brat1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 11670879 ~ 11689525 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00001705
AAATAATACAGTACGAGGAGGCAACATTGATAACAGACTGTTGTAAATGTGACGAGAGAAAAGTTCAATGTGCAGGTGATTCAGGGACTTGTATTTGATGGACGGTGACTGCTCGTCGTTGCTGCCAGCGGTCTGCCTCGTTCTGGCCGACCCGAAGCAGACTCCACCGGATGACACCTCTCTTGAGAAACTGTTGGACTGGTTCAAAGATCTGCACAGCCAAAGTAACGGGCAGGTACTTTTAGAGCATCAGCCGTGTCTCTTGGAGTTTATTTCCAGTGTTTGTGCATCTAAAGCCACAGATCCTGCCATCCTGTCTTTCACCCTCAAACTTACTGGACTTCTGGCTGCCAGCAAACAGGATTTTCACTTGCTTGAGGAGGGAGGTcatttggtgtgtgtgtttgagcggGAAGCCTGGAGTGTGTGTGATCTCTGGGAGGATGCCTCCGTTCGCAGTGGCTGGATACAGGGACTGCTGAATATGCTGAAACACCAGCAAGCCCTAGACTTTATCTGTAGACAAGGACTCATCAAAGTGATCCTTCAGCTGCAGAACGACAGGAGTCTGTTTGTTGCCTGTTTAGCTAATCAGCTATTAGTGCAGATCCTAAAGCTCCTCACCCCATCAGACGTGACCAGCGGCAGTGATGCTGTGGTATCCAGTAAATCCTCTTCGAGTCTTGATTGGGTTTCAGTCTCCTCTGAGATTACGAATGCTGTGGTTGAGGCGTTGAGCTCAGAGAATCATCCGCAGGTCCTCCAGGGCGTGCAGCTGCTGTCACTGGTTCTCTCTCAGTGTGAAGAGCCTATCAGAAGCTCTCTGTGGAAAGATGTGCTCCCACCTCTGGAAGTCCTAATCAACAGGGGCTCTGAACCACTGACTCAGCCCCTCATGACTGTTTTACGTGCTGCCGTGATGACTCCTCTGCTTGGCCAATCAGAGTATAAAGTGGAAGAATTTTTGGAAGTCATGCTGGGTACTGGAAACAGAAAGGAGGGCATTCTTTGCGCAACACTAATCGTAAAGCTGGAGAAATGTCCTAAAGTTTTAAAGAGGAAGGCCATGGATATTATCTTACTTCCCTTGCAGTGTGTGTCAACACAGTCTCAAGATGaaaaggaggTGGATTTAGTCCTGAAGGAACCGCTATCCCAGAAAGCCTTGTGTATTTCTCTCCTCGTGCAGAGTTTATCAAGTCTAGCTGAGCTGGCACACAAAGAATACTTTGAAGGCGTTTGCATTCCCTCTGTCACCAGCCGTGTGGTGCAGCTTTTGAGGGTTTGCTCTGGCCATTGCACCTCCTCTCTGCTTCATGTGAGTGCCTGCACTCACCTGATTGGCTCCTGCAAGATACAGAGGTGTGGTCTGGATACATTAGGTGCTCTCAGCGTGTATGAAGATAATTTGGACTTAAGAAAAGACATATTTGGTGTTTTGTTGGATTATCTAAAGAGTCCAGATTCACACGCCACAgttttaaagaaaacatttcagGCAGTTTTGAGGTGGATTGGTGTGTGTGCATCTTTCCCTGATCTCCTGCAGTTTATCAGCAATGACCTCTTTCCTGTTCTGGAGAAACGTATGTGTGATGTGCGGTGGGAAGTTCGAGATTCAACACTGGAGTTCATCACCCAGCTGACTGTGGCCCTCAGTGataacAGTGGTTTTGTTGAAGTTCTCTACACCAGTGGCCTGGTCTCCATTCTCCTGTCTTTACTGTCAGACACTGAAGGCTATGTCAGAGCGAGTGCCGTGACTGCTGTTGGAGAAGCAGTTACCTCTTCTGTCCAACAGATGGCGCTAGTCAGCAAGATCAACTTGCTGGAGGAGGCTTTGGCACAGATGATGATCATTCTCTCTCAGGACACAGAGGGCTTTCCTCGTAGAGCCGTGGTCAAAACCTTTACATCATGGCTGAAAGGGTCAAACCCCATAACAGCCCTGGACTCTTCCCTGAGCTCGGTCCTGTCTCTCGGGGGCAACGATTTTGACTGGGAAGTGAAAATGCACACGCTGGAGCTCGCAGAAGCTTTGATGGAGAAGATGCTGACCTGCTGTCCGTATGCAGTGCAGAGCTTTTCTTCATCGGAAAGGACGCGTTTGACACAATCCTTGAGCAAACTGAAAGATCTCGGCCTGTTTGATGTGCTGCTCAATGGCTTGTTTGACTGCGACAGACCAGTGTGTGAGAAATCCTGCCAACTCCTGCTCAAACTCAAAAGACTTAATGCTGAAAAGGCTGATTTTGATCATGACGCTCTTGTTTTGAAAGCATGTGGGAACCGATGGGGGGATGAGGTGCAGAGTAGATTCCTCAACAAACAACAGGTCAAAGCATCTGAGCATGTGCTGATTGGAGGTGGCGAGGGAACAGAGAAAGATCTGCACTGCATCAAAGAGATTCCCCTGTCTGTGATATTGCAGATTCTGGATCTAGATGATATGCAGAGGATGCTGAAGTTGAGTAGTGATCATGTTGTGAATTCCCCCCGATCGCTGATGGAGGACATTCTTTCAGCGGCTCAGCAAAGCGAGGAAAATATTGTAGATTGCTATTGAGAAAAATTCTTCTAGCCTTGTACCTTTTAGTGTGGGAAGTTTAATAAAGACAGTATCAAGGTc

Function

symbol description
brat1 Predicted to be involved in cellular response to DNA damage stimulus; positive regulation of protein phosphorylation; and response to ionizing radiation. Predicted to act upstream of or within cell population proliferation. Predicted to be located in cytoplasm. Predicted to be active in nucleus. Orthologous to human BRAT1 (BRCA1 associated ATM activator 1).

GO:

id name namespace
GO:0006974 cellular response to DNA damage stimulus biological_process
GO:0010212 response to ionizing radiation biological_process
GO:0008283 cell population proliferation biological_process
GO:0001934 positive regulation of protein phosphorylation biological_process
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component

KEGG:

id description
ko03400 DNA repair and recombination proteins

ZFIN:

id description
ZDB-GENE-060421-6989 Predicted to be involved in cellular response to DNA damage stimulus; positive regulation of protein phosphorylation; and response to ionizing radiation. Predicted to act upstream of or within cell population proliferation. Predicted to be located in cytoplasm. Predicted to be active in nucleus. Orthologous to human BRAT1 (BRCA1 associated ATM activator 1).

Ensembl:

ensembl_id ENSDARG00000062585

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00001705 True 2629 mRNA 0.48 14 11670879 11689525

Neighbor

gene id symbol gene type direction distance location
XLOC_001059 chst12b coding downstream 28366 11641482 ~ 11642513 (-)
XLOC_001058 si:dkey-26i13.3 coding downstream 39245 11626252 ~ 11631634 (-)
XLOC_001057 si:dkey-26i13.5 coding downstream 54584 11615273 ~ 11616295 (-)
XLOC_001056 si:dkey-26i13.6 coding downstream 63817 11606010 ~ 11607062 (-)
XLOC_001055 si:dkey-26i13.7 coding downstream 74050 11595798 ~ 11596829 (-)
XLOC_001061 NA coding upstream 3632 11693157 ~ 11695392 (-)
XLOC_001062 NA coding upstream 22018 11711543 ~ 11714363 (-)
XLOC_001063 ttyh3b coding upstream 92019 11781544 ~ 11850353 (-)
XLOC_001064 iqce coding upstream 165185 11854710 ~ 11878845 (-)
XLOC_001065 grk4 coding upstream 213054 11902579 ~ 11973341 (-)
XLOC_001054 NA non-coding downstream 153526 11470790 ~ 11517353 (-)
XLOC_001051 BX004756.1 non-coding downstream 608232 11062524 ~ 11062647 (-)
XLOC_001050 NA non-coding downstream 733064 10936724 ~ 10937815 (-)
XLOC_001049 BX323090.1 non-coding downstream 800638 10870117 ~ 10870241 (-)
XLOC_001045 NA non-coding downstream 930438 10739165 ~ 10740441 (-)
XLOC_001067 NA non-coding upstream 375631 12065156 ~ 12068877 (-)
XLOC_001068 NA non-coding upstream 416122 12105647 ~ 12126625 (-)
XLOC_001072 NA non-coding upstream 747333 12436858 ~ 12441010 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000300_02345055_02356103 BRAT1 coding CI01000300 null 2345007 ~ 2356303 (-)