G283423


Basic Information

Item Value
gene id G283423
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000071
NCBI id null
chromosome length 5214881
location 4962938 ~ 4965441 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU321201
CTAATCCTTTAATAGCTGCTAACACTTTATTTTGATGGTCCCCCAACAGACATTCTACTGACTATACTATTTGCAAGTATGTCAACTTATTCTACTAACCCTAACAGCCTACTAATACTAATAAGTTAGTTGACATGTAGGTGCAACGTTAATTAACAGAATGTCTAATGGAGACCATCAAAATAAAGTGTAACCATTTTTTTTTTAATTAAATCTCAAAACCTTAAAGGGTTAGTTCACCCAAAAATGAAATTTCTGTCATTAAATACTCACCTTCCAAACCCGTAAGACCTTCGTTCATCTTTGAAACACAAATTAAAATATTTTGAGCTCTCTGACATGTCCATAGACAGCAATTTAACTACCACTGTCAAGGCCCAGAAAGCTACTAAAGACATTCTTAAAATAGTCCACGTGACTACAGTTGTTCAACCTTAATTTTATGAAGCGATAAGAATACTTTTTGTACACAAAAAGAAAACAAAAAGAATGACTTTATTCAACAATTTCTTCTGTCTCCTGTCATTCTATTGTTGTCGCTTCATAACATCAAGGTTGAACCACTGTAGTCATGTTGACTATTTTAACAATGTCTTTACTCCTTTTCTGGACCTTGAATGTGGTAATTTCGTTGCTTTCTATGGGGGATAAAAAACCTCTCGGATTTCATCAAAAATATCTTAATTTGTGTTCCGAAGATGAACGAAGGTCTTACGGGTTTGGAACGACATGAGGGTGAGTAATTAATGACAGAAATTTCATTTTTGGGTGGACTAACCCTTTAAGACAAGAAGGGTCAACATCCAGAGCTAAAAACATTTTTGTGTATTTAAAAAGATGACACATGTCCTTCCAAACCCACATGTGTTTCTTTGTTCTGTGGAAAAAGACGCATTTTAAATAATGAACTGGTTGTTTAATCCCATGCAGTTTTCCTCAGGCACCTTACGTGTTCCACAGAAGTAAGAAATTCATATGTGTTTGAAATGACATGAGATACAATTTTCATTTTGGGGTGAACTATCCCTTTAAGGTTCTGGGCAACAGACACCATGTGACTGCAAATGTCAAACATCACATCTCTATTGGCTAGTCTTTCTAATGAGAGAATGATCTGCTCATGTTGCTCCCAATCTCTCCCTCAGCTGATGAGTTTAATTAGGGCAAATCACTGTTTAAAATGCTAAATGAGGTGAGCCTGAACCTCACTACAGATATATGGCTCAAAATGGGGTTTAATGGCATATTGTTTAATATTTAATATTTCTAATATTTTATTTAAAATCATGTATTTTTTTAAATAATTATTATTTTTATTTTTTTAAGATTTTTTTTTTTTTGCCGTTTTTGCCTTTATTATGATAGGACAGTGATTAGACAGGAAGCGAAGTGGGAGAGAGAGGGGGACGGGATCGGGAAAGGACCACGAGCCGGGACTCGAACTCGGGTCGCCCGAAGTGCATTGGCGCTACATGTCAGCGCGCTGCCCATGAGGCCATCGGCGCCGACAAATAGTTATTTTTTATAATATAATATATAATAAATATTTTTATACACATACAAGTAAGACAAGTAGTTAATAAGTATTTCAATGCAATGTGATTATAAAAATAGTGATGTTTGTTTCAGAAACCTTGGTTTCACTCAACACATAATAGAAATATGCAGAGAATGAACTGACCTGAAACCTTCATCAAGAAGCACCTCTGAGATCCACCAATTACAAGCAGATAAACTCATTTAATTCCCTCGATCAGAGTCAGATGAGCGTTAGTGCTTAAGAAAGACCCGTCTAGTGCTATCATAAAAGACGATAAATTGCCATACCACACAAGATTATTAGCAGGGGATCCTTAATTGAATTAGGAGCAGTGAGTGAAAGAAAGAAAGAGAGAGAGAGAGAGAGTGCGCATGGTAACGGAAGTAAAAGGGGGTGTTGTAATTAGCTGTCTTTTCAGTGTAGACTACACACTAGATGTGCATGCTGTATATATTTCATATTAGATTTATTTGTTAAAAAACCTGGTGAGCTGACTACAGAGGAAGCGTTTTAAGGTGTCATGAACACATTACTGTGCAAAGGCTGTTTCGAAAGGTAGGCAAAATGACTATGCTGCCTTGTATCATTTTCAGGAAATGGAATCCCAGAATGCACTGTCAAGCTCAGTAAAAATAAAGACATCTGTTATAAAAATCGACATGTTATAAAATAGTCGAGTGTAATTAAAAATGGATTATTTTGCACAATACACACTTCCTGGCCAAAAAAAAAAAAAAAGCTGTTTGGATTTTAATAAGCAAATACTTTGGAGTCTATGGATGGATCATTATTACAATGATTATTATGTTTCTAGCATATGTTTGGCAACGGTTCTTTTAACCCTAAAGGATGGAGTGTGTAGCTTTTCATTTCTTAAACAACAATGTAGAAAGACACATCATGGCCATATTCCAGGATGACAATGACAAGATTCACCAGGCTCAAATTGTGAAAGAATTGTTGG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU321201 True 2504 lncRNA 0.36 1 4962938 4965441

Neighbor

gene id symbol gene type direction distance location
CI01000071_04903716_04959830 KSR2 coding upstream 3077 4903716 ~ 4959861 (+)
CI01000071_04851502_04865548 KSR2 coding upstream 97390 4851502 ~ 4865548 (+)
CI01000071_04834539_04839129 WSB2 coding upstream 123583 4834326 ~ 4839355 (+)
CI01000071_04825708_04831021 NA coding upstream 131871 4825708 ~ 4831067 (+)
CI01000071_04780189_04798898 AIFM3 coding upstream 164040 4780189 ~ 4798898 (+)
CI01000071_04982029_04982493 NA coding downstream 15915 4981356 ~ 4982540 (+)
CI01000071_05002535_05056745 NOS1 coding downstream 36748 5002189 ~ 5057408 (+)
CI01000071_05081168_05081463 NA coding downstream 115727 5081168 ~ 5082153 (+)
CI01000071_05082669_05087793 NIPSNAP1 coding downstream 116859 5082300 ~ 5087817 (+)
CI01000071_05102723_05110135 GATSL3 coding downstream 137282 5102723 ~ 5110220 (+)
G283442 NA non-coding upstream 139150 4822773 ~ 4823788 (+)
G283440 NA non-coding upstream 144709 4817956 ~ 4818229 (+)
CI01000071_04737911_04747060 LZTR1.L, LZTR1 non-coding upstream 214596 4737421 ~ 4748342 (+)
G283401 NA non-coding upstream 244016 4715415 ~ 4718922 (+)
G283422 NA non-coding downstream 3627 4969068 ~ 4970189 (+)
G283457 NA non-coding downstream 17154 4982595 ~ 4989704 (+)
G283557 NA non-coding downstream 99191 5064632 ~ 5064913 (+)
G283580 NA non-coding downstream 100350 5065791 ~ 5066007 (+)
G283570 NA non-coding downstream 148156 5113597 ~ 5115165 (+)
G282080 NA other upstream 1906407 3056084 ~ 3056531 (+)
CI01000071_02815324_02834097 NA other upstream 2134334 2815127 ~ 2835525 (+)
CI01000071_01374449_01376813 NA other upstream 3585268 1373996 ~ 1377670 (+)
G280443 NA other upstream 4040842 905217 ~ 922096 (+)
CI01000071_00792254_00802384 SLC6A4B, SLC6A4 other upstream 4159621 791346 ~ 803317 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_015031 NA non-coding NC_007130.7 CM002903.2 43897940 ~ 43901052 (-)