XLOC_010610 (BX005389.2)


Basic Information

Item Value
gene id XLOC_010610
gene name BX005389.2
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 19617088 ~ 19618599 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00020782
ctatttctcacgggttaatgagcttattgtatagtgtatcattaattgtacattttatttttggtgttcaggtgtagggaatgatttgtatacaaatttatttgaaccccatacagattggtatggttgtaccatagatttagattattaaatgttaagtcttattttactcttattatatttatcttttttgcagctacagcaattgatgttgaaaaactgatgctactaatctctcctcacttgattattcaaagtaatgttgatgtctttctcattttgattagattttgaaatgtcaagttgttcacagatttgttgtgaggagttttatgtacaacctctttttcttcctCTAGtagcgatgcagtggcacagtagtagtgctgtcgcctcacagcaagaaggttgctggttcgagcctcggctgggtcagttggctgaatacaatggcataatgattctgcttgctcacaggagctcagattgtgatggacctggaatgcgacaccagttactcttaagtcaagaaccaaataaagcacagatgtggagggatctgcaactaaactaactggaggaaaggaacctttaggtaaaaacacc
>TCONS_00020783
gtgtcttacaataatatacaaaaaggaatcggtttaggcggattcgactcattactgttctaaggagccgattcatagaaccgagcCGACTCGATTCGACCTTAACCAGGCAAGCAACGGCTCTTCTAATTTGAAATCAACCTGTCGCCTTTTCTTCcagtgaattcatcctcgtagcgatgcagtggcacagtagtagtgctgtcgcctcacagcaagaaggttgctggttcgagcctcggctgggtcagttggctgaatacaatggcataatgattctgcttgctcacaggagctcagattgtgatggacctggaatgcgacaccagttactcttaagtcaagaaccaaataaagcacagatgtggagggatctgcaactaaactaactggaggaaaggaacctttaggtaaaaacacc

Function

GO:

id name namespace
GO:0021535 cell migration in hindbrain biological_process
GO:0003002 regionalization biological_process

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000117272

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00020782 False 606 lncRNA 0.37 2 19617088 19618074
TCONS_00020783 True 421 lncRNA 0.46 3 19617088 19618599

Neighbor

gene id symbol gene type direction distance location
XLOC_010609 abcb5 coding downstream 48293 19537038 ~ 19568795 (-)
XLOC_010608 NA coding downstream 119284 19495744 ~ 19497804 (-)
XLOC_010607 BX005032.1 coding downstream 192955 19422295 ~ 19424133 (-)
XLOC_010605 dnah11 coding downstream 243778 19181163 ~ 19373310 (-)
XLOC_010606 CR936240.1 coding downstream 426457 19190514 ~ 19190631 (-)
XLOC_010611 BX005389.5 coding upstream 7927 19626526 ~ 19627832 (-)
XLOC_010612 BX005389.3 coding upstream 12815 19631414 ~ 19634470 (-)
XLOC_010613 NA coding upstream 188929 19807528 ~ 19821312 (-)
XLOC_010614 NA coding upstream 193035 19811634 ~ 19813802 (-)
XLOC_010615 CU855948.1 coding upstream 209777 19828376 ~ 19834469 (-)
XLOC_010626 CR392024.2 misc upstream 1276513 20895112 ~ 20895175 (-)
XLOC_010604 CR936240.2 non-coding downstream 466345 19145147 ~ 19150743 (-)
XLOC_010602 CR848057.1 non-coding downstream 752702 18864270 ~ 18864386 (-)

Expression


Co-expression Network