CI01000072_01351729_01362820


Basic Information

Item Value
gene id CI01000072_01351729_01362820
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000072
NCBI id null
chromosome length 5473029
location 1350472 ~ 1363039 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000072_01351729_01362820.mRNA
CTTTAAAAAAGTAACAATTTTTCTGAAATCACATATATATGATAATCCAACACATCATGTGTCTAACGTTCGTTAGTTTAGATATTAGTCACTCATGAAATTGATTTTTGGAACCTGATTGATGATTCACTGATTTGTTTTTGTTAATGTTTGTGTGGCTGTGAGATATACTGTATGTAGAAACAAACCAAAATAGATCTACGATTACAGTGACATTACCGGCAAAGGGCGATCGAAGGCAAGCTGTAATGAACAAATCTTGGGTTTTGAAATGTTAAAGTCATATTTGTGATTCTAATTTGAAAACTGAAAGAGCAGCTGAATGAATCATTTTATATCTGTTAATGGAGGGGGATGTGAAAAATGAAGAAGACCTAGCATGCAAAAATGTGTATGTCATGCATAATTCAAATAAAAATAATTTTAAGCAGAAATCGAGACTCATCAGACCAGGCAACATTTTCCCAATCTTCTATTGTCCAATTTTGGTGAGCCTGTGGGAATTGTAGTTTTTAAAAGAAGTCTCTAATGCTCACCAAGGCTGCATTTATTTATTTATATGGTACATGGGGAACAGGACTGTAAAATAGTGCTACCAAAGTATTTCAATGCCTTTGCAAGCCTCAAAAAACTATTTAGGTAATCTGTTTCTGTCATTCAGGGATATGCGCATCCTGTCGGAGAGTCCTGTGTGCAATTTTCATACACTCCAGAGTACACTAGTAAATGTTCCACCAAATTGTGATACAATAAGTTAAGTAACAATAAGTAATACATGATGCTTTCCAAAAAAGCTGTAACTTCATTGTTGTGATAGAGCTAGAGCCAGGACTGTAATTGTGGCAAGGGTTACGTAGAGCTGGGAGTCTTCAGCTGTTACATAGTTACTGTAAGTACACCAAGCTGTGAATATTCAAAGCAGCACGGGATATATTCAATATCATTACGCTGATTACATTTATATGTTGTAAATACAGCTGTTACTCAACTTGTAATTGGATTGTAAAAAAAAATTGATTGATCTTGCGAAACAATCTGTCGTCACGCAATGCAACCCTTTGCAAGGTCTGCAAACATCCTCCTCCCATCCTGTGGATTAAATCAAAGCGTTTCATTGTCTTCACTTCAGTTAATCGGTAAGCCTTCAAAGGTGGTAAATGCGGACCTGAAGAATGAACAGCTGTAGCAGGGCCCCTTACAGTCTATGAAGCAAAACCAGGCCCCTTACAGTGGCTTTGAGGATCACAACTGAAGATCATGGACGTCTCGAGTCCCAGAACTGACGCTTTGTCAATGGAGCCCAGTGCCAAGCTGTTTTGCTGTGGTTTTGTAAGGCGCTGCATCCCTCTGGTATACAGAGAAGAGCTCTACCACATCCTGCGCATGACTGGACCCCTGCTTGTGTGCCGGTTCCTGAATTTCCTCCTTTTCTTTGTGGTGACAATGTTCTGTGGACGTCTGGGGAACACTGTCCTAGCGGGCTACGCCATGGCTTCAGCTACTATAAATGTAACAGCTGCAGCGACGGGGTTAGGACTGGCTTTGGCATGCGACACTTTGGTATCACAGACATTCGGGAGTAAGAACCTTCTCCATGTAGGCGTCATCCTGCAGAGAGGCATCCTAATTCTGACGCTCTTCAGTTTGCCTTGTTGGGCTTTGCTTTTGAACACCCAGCCCCTCCTTCTCTATCTGGGACAGGACCCCGAGGTGGCCAGGATTGCACAACTCTATGTGGTTGCATATTTGCCTGCAATTCCGGCCATGTTTCTGTATCAGCTGCAACTGTCATATCTTCAGAACCAGGGAGTGATCAAGCCTCAGATGTATGCATCTGCAGTTGCCAATATTGCCAATGTGATAGTGAACTACTTTCTGCTGTACTGGTGGGATTTTGGAGTTTATGGGTCTGCTGCTGCAAACACCTTTGCTCAGGTTTTTAATTGTTTTGCCCTGTTTTGTTTCATTCGCTGGCAGAGGCTCCATGAAAAAACTTGGGGAGGGTGGTCTTCTGAGGCCCTGCAGGAATGGGGTTCCTACATGAAGCTGGCCATCCCCAGCACACTGATGATCTGTTTTGAATGGTGGATCTATGAAGTTGGAGGCTTCCTGGCAGGAATGCTGAGTGAGGTGGACCTGGCTGCTCAACACGTGGTTATAATGCTGGCATACATCAACTACATGGTGTGTTTGGATAATTTGAGAATATTCATATTATCATATAAAATTCACCTTTATCCTTTTATCCGTTTTTTCACCTCCATCTTGATATTCCAGATCCCATTAGGAATGCAAGGAGCAGCATGTGTTCGTGTGGGAAACGCACTTGGCGCTGGGGAAACAGCTGCTGCCATCCTTACCAGCAAGGTGTCCCTCATTAGTTCAGCTGTTATAGCAATCATCCAAGGTTTTATCCTGGCCTCAACAAAAACAGTCATTGGCTTCATATTCACTTCAGATGAGACTATAGCAGAGCTTGTGTCTCAGCTACTGAACATCTACTGCCCTCTTCAGTTCTTTAATGGAATATTGTGTGTTGGCATGGGCGTTCTCCTTGGCACAGGGCAGCAGAAGATAGCTGCTATTGCTAACCTATTTGGCTACTACTGCATTGGACTCCCATCGAGCATTGTTCTGATGTTCACGGCCAAGTTACAAGTTGCTGGCTTTTGGCTGGGCCTCCTCATTGCGGTCTTTTTACTAGCGATTTTTTTCGTCGTGGCCATTTTCAAATTAAACTGGAAGAAAATGACAGAAGAGGCAATTGAGCGTACAGGAAAGAGTGCAAATGGAGCAGCAAATGGAGCAATGACCCCTGAGTTTTGTACAAACCATCGCAACAGCTTCTACCAGGTGGTCCTAAATACAGAGAATGGGAATGGATACATGGTTGTAAGCTCTCACGATCAGGACGAGGGGCTCAACAGTACTGTGGTACATGAGGGGCCAAACGTGACTCAAGTGGATGAAAAGCCCGTAGCTCTGCTCTCTACCTCTCAGCTGATCCTCAGGAGGGGTCTGACCACCCTCGCTGCTCTTCTCATCCTAGCTGTAGGGATAGCCATCCATCTCATTGTGCCTTTACCTGAGATATCTTATCGTGCGGGTGCAAATTCTACTTTGGTCTCAAACTTTACCACAGCCACTCCCATCTATTCAACCAGTATCATTTGAAACCAGGACCTCAGATAGATTCACTGTGAACATTTTATATCTGTATGCTGTGAGAGGCAACAAAGAAATTTAATTGAATTAGAAAAATAGAGGCATTTTTACAGTGGTCCGGGGCTGTATATTGTAGACCTAGACAGATGATCATATTTTTATCCTGAGTGCATTTGCTTTGTCCACATCATTAGGCCAAATAGTAAGAAAATTGACCGGCTTAGCAGA

Function

GO:

id name namespace
GO:0006855 drug transmembrane transport biological_process

KEGG:

id description
K03327 TC.MATE, SLC47A, norM, mdtK, dinF; multidrug resistance protein, MATE family

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000072_01351729_01362820.mRNA True 3393 mRNA 0.43 16 1350472 1363039

Neighbor

gene id symbol gene type direction distance location
CI01000072_01334982_01348258 NA coding upstream 2214 1334982 ~ 1348258 (+)
CI01000072_01272628_01318779 PITPNM3 coding upstream 31393 1272530 ~ 1319079 (+)
CI01000072_01238939_01264489 NA coding upstream 85007 1238429 ~ 1265465 (+)
CI01000072_01183833_01210925 KIAA0753 coding upstream 138260 1183539 ~ 1212212 (+)
CI01000072_01163522_01163779 NA coding upstream 186513 1163008 ~ 1163959 (+)
CI01000072_01391395_01404483 WDR81 coding downstream 26487 1389526 ~ 1406073 (+)
CI01000072_01406735_01412673 SERPINF2B coding downstream 43696 1406735 ~ 1413120 (+)
CI01000072_01413987_01424254 RPA1 coding downstream 50948 1413987 ~ 1424254 (+)
CI01000072_01724644_01730223 NA coding downstream 361413 1724452 ~ 1731160 (+)
CI01000072_01762899_01783522 DPH1 coding downstream 399528 1762567 ~ 1783960 (+)
G284550 NA non-coding upstream 16757 1333476 ~ 1333715 (+)
G284464 NA non-coding upstream 281314 1068520 ~ 1069158 (+)
CI01000072_00873737_00876816 NA non-coding upstream 476076 873737 ~ 876902 (+)
G284338 NA non-coding upstream 494595 855530 ~ 855877 (+)
G284296 NA non-coding upstream 604500 745722 ~ 745972 (+)
G284559 NA non-coding downstream 18704 1381743 ~ 1442788 (+)
G284696 NA non-coding downstream 224112 1587151 ~ 1590509 (+)
G284694 NA non-coding downstream 293813 1656852 ~ 1696292 (+)
G284851 NA non-coding downstream 468629 1831668 ~ 1831971 (+)
G284859 NA non-coding downstream 517551 1880590 ~ 1880807 (+)
CI01000072_00338411_00351144 NA other upstream 999184 337071 ~ 351288 (+)
G284742 NA other downstream 618491 1981530 ~ 1985140 (+)
G285428 NA other downstream 2607218 3970257 ~ 3976214 (+)
G286470 NA other downstream 2806065 4169104 ~ 4175651 (+)
CI01000072_04225105_04268007 SIK2B, SIK2 other downstream 2861799 4224789 ~ 4268148 (+)
CI01000072_04338747_04342064 SDHD other downstream 2975680 4338719 ~ 4343266 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_009265 slc47a4 coding NC_007126.7 CM002899.2 26616004 ~ 26636826 (-)