CI01000072_01724644_01730223


Basic Information

Item Value
gene id CI01000072_01724644_01730223
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000072
NCBI id null
chromosome length 5473029
location 1724452 ~ 1731160 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000072_01724644_01730223.mRNA
CTATAAATTCATAAGCACCGTTTTGCTGGGAAATGATGACATACGGTGCAAACACATTCGCAATTTGCACAGCACTGCCTGTGTATATACATGTATATACATATATATACATTTAAGTAGAACACGCAATAGTGTTCAACACCTCATAGAAAACCAAATGTTTTCAAAACTGGAGAATGCATCGCTGGTCAGATGTGTCAGAAACTGGCCAGAAACTCTCTCACGCTGGAGGGCATGCCATGTTTTGATGGAATGATTATGGTTGTAATTGACTTTACTGCAGTGATCCAGCATATTTTAATAATTCATACAGCAAACTACACCGCTGACATGGCCTTGCAGTTGCCCGAGGGTCTGCAGATGTTTGCCTGTGTGATCGCTGACATCATTGAAAGAATAAGCAGTCCTATTCTGGATGTCTGCTCAATAATAATGAGGGACATTCTCAGCTGTGGAGAGATGGGGCCGCTGGTTCGATTTGGAGTTCTGCTGTCAGCCCTTCTGCAATCACATCCTGTATTCATCAACTTCCAGTTTATGTAACCGTCTACTTTTTGCTCTTGTTCCAGTGTTATTCTCAATGAAACTATTGTTAAAGGGATAGTCCTCAAGCCATCCTAGGTGTAAATGACTAAGTTCTCTCAGACAAACACAATTATAGTTATATTGAAAAAATATCCTGGCTCTTCCAAGCTTTATTTATAATGGTAGTGAATGGCACACGATTTTAAAGCCCCAAAAAGTGCGTCCATCCGTCATGAAAGTATTCCACACGGACCATGGGGTTTAATAAAGGCCTTCTGAAGCAAACTATAATCCATACGCAATCCAAAGCGTACACGGAAATGTAACTTCTGATGCAACGAATGACGTATTGACGAAGGTGGAAGCGCAGAGGATAGAGTAAAACAAAACACTGGTCATGAATTATAAGTCTAAAATGAGAATTTTTAAATAGAAATGTCGTAGGATTTCGATATATGAGTGTGGGAGGAGATGAGTCAGAGGTTACGCTTTCGCCATAAGTCGACTTGGATACGAATGTTTGTCAGAAGCTGCTTATTATAGTTTATAAAGTTTTAAATATGGATATTTTTCTTACAAAAACCCATCACTTCACTTCAGAAGGCCTATATTTAGCCCTTGGAGTCGCATAGATTACTTTTATGATGGATGGATGTACTTTTTGGGGGCTTCGAAATCGTGAGCGCCATTCACTACCATTATAAAGCTTGGAAGAGCCAGGATATTTTTTTAATATAACTCCGATTGTGTTAGTCTGAAAGAAGATAGTCATATACACCAAGGATGGCTTGAGGGTGAGTAAATCATGGGATAATTTTCATTTTTGGGTAAACTGTTCCTTTAACAAGGTTTTTTGAGGGTTCCTGTCAAAGATGATGATGACGAGATGGGAAAATGTGTGATAAATTATTTTAATTAAAACATACTGTTAACAAAAAAATTTGACAAGAAAAAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000072_01724644_01730223.mRNA True 1480 mRNA 0.38 5 1724452 1731160

Neighbor

gene id symbol gene type direction distance location
CI01000072_01413987_01424254 RPA1 coding upstream 300198 1413987 ~ 1424254 (+)
CI01000072_01406735_01412673 SERPINF2B coding upstream 311332 1406735 ~ 1413120 (+)
CI01000072_01391395_01404483 WDR81 coding upstream 318379 1389526 ~ 1406073 (+)
CI01000072_01351729_01362820 NA coding upstream 361413 1350472 ~ 1363039 (+)
CI01000072_01334982_01348258 NA coding upstream 376194 1334982 ~ 1348258 (+)
CI01000072_01762899_01783522 DPH1 coding downstream 31407 1762567 ~ 1783960 (+)
CI01000072_01864149_01879788 NA coding downstream 132751 1863911 ~ 1880204 (+)
CI01000072_02000581_02009243 TAOK1, TAOK1A coding downstream 268480 1999640 ~ 2009426 (+)
CI01000072_02016536_02023336 NA coding downstream 285262 2016422 ~ 2023361 (+)
CI01000072_02028275_02032319 MMP20B coding downstream 296716 2027876 ~ 2032703 (+)
G284694 NA non-coding upstream 28160 1656852 ~ 1696292 (+)
G284696 NA non-coding upstream 133943 1587151 ~ 1590509 (+)
G284559 NA non-coding upstream 281664 1381743 ~ 1442788 (+)
G284550 NA non-coding upstream 390737 1333476 ~ 1333715 (+)
G284464 NA non-coding upstream 655294 1068520 ~ 1069158 (+)
G284851 NA non-coding downstream 100508 1831668 ~ 1831971 (+)
G284859 NA non-coding downstream 149430 1880590 ~ 1880807 (+)
G284867 NA non-coding downstream 177976 1909136 ~ 1909363 (+)
G284869 NA non-coding downstream 179852 1911012 ~ 1911361 (+)
G284871 NA non-coding downstream 182835 1913995 ~ 1914302 (+)
CI01000072_00338411_00351144 NA other upstream 1373164 337071 ~ 351288 (+)
G284742 NA other downstream 250370 1981530 ~ 1985140 (+)
G285428 NA other downstream 2239097 3970257 ~ 3976214 (+)
G286470 NA other downstream 2437944 4169104 ~ 4175651 (+)
CI01000072_04225105_04268007 SIK2B, SIK2 other downstream 2493678 4224789 ~ 4268148 (+)
CI01000072_04338747_04342064 SDHD other downstream 2607559 4338719 ~ 4343266 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_009255 dph1 coding NC_007126.7 CM002899.2 25910501 ~ 26089064 (-)