CI01000072_01864149_01879788


Basic Information

Item Value
gene id CI01000072_01864149_01879788
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000072
NCBI id null
chromosome length 5473029
location 1863911 ~ 1880204 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000072_01864149_01879788.mRNA
ATATATAATCTACCCCACTAGTCTAAGGCTAGTCTAACCAACATATGTAGCAGGCTGGTAAGATGAGGTCCCCAACACTCTTCTTTAACCAGCAGGACGTGGTCAACCAGTTTAAACAAAAGATATAATGCTGGTAGACCAGCATTTTTTGGTCCACGAGCTAGACCAGCCTGAACCAGCATGGAAATTCATTAGAGCCTGTTAGATAAATAGTCCACCATGCTGCCCTCTGGCCCAGATGTGCGGAGGATGCCAGCAGGATGAGCTGGCTATAAGGAGGATGATTGCTTTGTCAAGTTTCTGGTTCTTCAGGATGAGGAGGAGGGTTCACTTCCTCCCCCTGCCTCCCTGCAGCTGGTATTGTTCTCCGGGCACTTTAACCCCCCGCTCCTCCAGTCCCAGTCGGCTCTCCATCTTCCATCCTTCCCTGGAGCTGGCAGCAGAGTCTGGGCACTCTCCACAGCATTGGCCTCAACCCCAACAGGATGTGGAGCTCAGCATTTTAGGTCTGAAAGGCGGAGTGATTGTATTATTGGAGTTACTCATGCTTTCAAAAAGCTTCTTTTTTAGGAAACAATTTCCTTCCATTCATAAGATGAGTTGTAGGTCAGGCCTAGGTTTTTTCCCCTCCTCATTGCCCGGAACAGCAGTGATGGAAAACAAACACATCAGCACTTGGCATTATGAACCTTCGAATTGCCCTCTCTCTCCTCCCCTCGCTCTCTCCTTCCCTTTCATCCTGATTCCAGCTGCACACCCATCTCGCTCTTTCTGGGGTCCCCTGGCTACAGTACCCATAATTCACCATAAGACACAACACCCACACCAAGCCCTCGCTAACCTTTATAGCACGGCCAAGGCACAGCGAGAGGAGGAGAGGGGCAGGGGACTGGTGATGGGGCAAATACTTTCTCTGTGTCTCTTCGGGCCCCTGACCAAGAGCAAGGCCAAGAGGCCCCCTCCAAGAGGAGCGTGTGTCACTGTTGGTGTTGATGCTGCTTTTTGGGCCTCACAGCTGTATTATGGTGCTGTTCCAGGAAGAGCTGGATGCGGCTGGGGGCAGGTTTCTCCCACAGTCGTGAGCGCTGGGCTGTGTGGCTGCATGTTTATATTGGAGCCCGGACTTCCTAGTGGCAGCCTGCACCTATCTAAACATCCCTCCGGCCGCTGCTCTGTGTTCCCGGCCTCGCACGGCCTCCCTCTCTCCTTCTCCTCGCGCCATGCTCCACTTTAGGCTGGAATGCTTCGGAGATGACTGAGAAGAAATAGATGGAAAAAGAGGGAGAGTTTTTCACATGCAGACATTCCGCTCTTTTTTTTTCTTTTGCATTACATGCTGCATCCCTCTGTTTCTGAATGGAGGGTTCCTGAGATTCTCCGAACTCTGACTTTAGCAGAATCTTGTTGCACACACACACACACACACACACACACGTTTAGCTTGTTATCTAAATGGGGACATAGCGTACAGTCCTACAAAAGCAAGATGCAGTAACTATAAAGGAAATTGGGCCTCTTAATTCTGTAACAATTTTAGGTCAGCTACACTCAGAGGAAAAGAGTGTGAAAAATGATTTCAAATCAATCAAGTTCAATCAAAAAAACTTTTCTAGTTGCAGTGTTGGTGTAGGTTTTGCTTGTTTGCCTTAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000072_01864149_01879788.mRNA True 1650 mRNA 0.49 5 1863911 1880204

Neighbor

gene id symbol gene type direction distance location
CI01000072_01762899_01783522 DPH1 coding upstream 79951 1762567 ~ 1783960 (+)
CI01000072_01724644_01730223 NA coding upstream 132751 1724452 ~ 1731160 (+)
CI01000072_01413987_01424254 RPA1 coding upstream 439657 1413987 ~ 1424254 (+)
CI01000072_01406735_01412673 SERPINF2B coding upstream 450791 1406735 ~ 1413120 (+)
CI01000072_01391395_01404483 WDR81 coding upstream 457838 1389526 ~ 1406073 (+)
CI01000072_02000581_02009243 TAOK1, TAOK1A coding downstream 119436 1999640 ~ 2009426 (+)
CI01000072_02016536_02023336 NA coding downstream 136218 2016422 ~ 2023361 (+)
CI01000072_02028275_02032319 MMP20B coding downstream 147672 2027876 ~ 2032703 (+)
CI01000072_02033013_02040077 NA coding downstream 152773 2032977 ~ 2040725 (+)
CI01000072_02058184_02067046 HIF1AL coding downstream 177683 2057887 ~ 2067049 (+)
G284851 NA non-coding upstream 31940 1831668 ~ 1831971 (+)
G284694 NA non-coding upstream 167619 1656852 ~ 1696292 (+)
G284696 NA non-coding upstream 273402 1587151 ~ 1590509 (+)
G284559 NA non-coding upstream 421123 1381743 ~ 1442788 (+)
G284550 NA non-coding upstream 530196 1333476 ~ 1333715 (+)
G284859 NA non-coding downstream 386 1880590 ~ 1880807 (+)
G284867 NA non-coding downstream 28932 1909136 ~ 1909363 (+)
G284869 NA non-coding downstream 30808 1911012 ~ 1911361 (+)
G284871 NA non-coding downstream 33791 1913995 ~ 1914302 (+)
G284793 NA non-coding downstream 36691 1916895 ~ 1919833 (+)
CI01000072_00338411_00351144 NA other upstream 1512623 337071 ~ 351288 (+)
G284742 NA other downstream 101326 1981530 ~ 1985140 (+)
G285428 NA other downstream 2090053 3970257 ~ 3976214 (+)
G286470 NA other downstream 2288900 4169104 ~ 4175651 (+)
CI01000072_04225105_04268007 SIK2B, SIK2 other downstream 2344634 4224789 ~ 4268148 (+)
CI01000072_04338747_04342064 SDHD other downstream 2458515 4338719 ~ 4343266 (+)

Expression


Co-expression Network