CI01000072_02041267_02050950 (NPAT)


Basic Information

Item Value
gene id CI01000072_02041267_02050950
gene name NPAT
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000072
NCBI id null
chromosome length 5473029
location 2040738 ~ 2053184 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000072_02041267_02050950.mRNA
ACACACACAAACCTTCCATTTTAAGCCCATCTGATGAGAGATGGTTAAATATTGTGATGGATTTTCAAGCATTATTTCACTAATCTCATATATCACCATTTATGTGTCCTTAGGCCTTTAAAAGTGCTCATTCAGCCCACTGAATGTACAAGTGTTGACCAGATTTCTTAATGAAACTACAACCATTATAAAACAAACAGCTAATGTGGTGTAGCGCCATTACAGGACTTTATCATTCTTCTGTGTAAACAAAACCCAAGACCACTGCCTCCACTTCAAGCAGTTTTATTGACCATGTGGTCCTGAAGACCACTCGGTCCTGTTTTTATTGTCTGAAGACATTACTGAAGCTCAACTGGTACAAAATTATCACTTTAAGAGTTCAGAGCCTCTGGTTTATTATTCTAAATGGTGTATTTGGTAGCGGTCTACAATAAAACCGATAGCCTATTGTCTTTACAAATGTATCTAAAAAACAAACACTCCGGCCAAATAAAGCACAGACCCCCCTCAAAAGCTCACATCAATATAGATATAAAGAAATGACAACACGGTTCGATTTCTATGAACTAACACCAATGCCAATAAATATCAATTATCGACCGCATGCGCTTGAGGCCATACAAACATCCATGCATCCATCCATCGACTGGAGGAAGAACCCGTTTGCCCTTTTATCGCTTATTATTAAATCCACACGCCATACCTACTAAAAAGGCTGTTGGAAGATAAACACCTTACCTTTTATTCACCGAGTTCACCATCTCTCTAGTGAAATCACTGCAAATCCGGGTTTTAAATTCTGTATCTGTAATGCTTAAATAGATTGCAGACGTCGTCTGCAGCTTGTTTATCTCTGTTCTGAAGAGGCTCGACTACTAGCCTTTGAATAAGTGCTGGGTGTCAAAATAAAAGTCACGGCGGGCACAAGCATCTATCTATCTATCCTTTAGTCCATATACTACATATAATTTATAATATAGTATGTATAGAGGCGAAAGAGAAAGAGAATATATATATATATATATATATATATATATATATATATATATACACACACACACATATATATATATATATATATATACACACACACACATATATATATATATATACATATATACACACACACACACACACACACACACACACACGATATGTATATATATAATATAGTATAAACTATAGTATAATCTATATAGTATAATCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTATAAACTATAGTATAATCTATATACTACATATAATGTATAATATAGTATATAATTAAATTATATATTTAATTTGTAATGTATGTATATATATATATATATATATATATATATATATATATGACCATATTTAAGTATATTAAAAATATTAGAGAGTTCTAATAACTGTCAGCTGAACGAATTAAAAAACTAGGAAAAACTACTTTTTCCTTTATTTCCTTTCGAATTTTACACAAACAATATCCGGGTCATAGGAGGCGAATTTCCGCGCCTTTTCGTTTTTCGATATGGATGAGAGAGCTAAACAACCTGCAATATTTCAACTATATTATCACATTATGGACTAATTTAGACTTTAATACTCATACTTCAAATGCAGACTATTTGTTGACATAAGGTAACATCGAAGTATGTTGCTCCCGTCTGACGTCGCCAGACTTGTGCTGGGCTACCTGCAGCAAGAAGGGCTCACTGCCACAAGTCGAGCTTTCATCTATGAAAGTCCAAACCTGAAGGAATATGCGGAGCACAGCTCAGAGGACGGGATCATCCCTGCCTGTGTGTTTTCTCTTTTTGGAAAAAACCTGATCACGATTTTAAATGAATATGTTGCTGTTAAAGCGAAAGACACAAGTCAAGAAAATCAAATCCCAGCAGTGATGACATCATTATGGAAAAAGCTTGACTTCACGCTCAACCAAATCAAGTCTCTGCAAAATTCTCCTGCTGTGCAGCGGAGTCAGCGATTGACTCCAGCAGGCCAATGTGTCCTCGGCACTGTGTCCACCCCTCAAGGCTTGCTGGGACATTCCACCCCAGTGTCTTACACGTCCCAGCATGCCAGACCCTCCACTCTCTGCCTTAGTCAGCCAGGGGAGTCACCTTTGCAGATACTGGTCCCTGATAATAGACTGAATCCAGGACCTTTGTCTCCGGCCCGCAGAAAATGTGACTCTCCGAGGCGGAGAGGAGGTGGTCAGTTGGGTGCCAGCGGGACCAGCAGGGCCACGGTAGTGTCCAGCACTCTCATCATGGAAACTCAGAGTGAAGAGACTGTGACGGAGAACTTATCTCAAATAGTTATAGAAAATGCCAGAGAAAAAATTCTCAATGATAGATCCTTACAAGAGAAACTTGCTGAAAACATCAACAAAATCTTGGCAAGTGATAATAGTCCTCAGACATCAAAAGCTGCCTGCAGTACTATGGAACAAGAGCAGTCGATCGATGAAATCCTGGGCCTCCAGGGGGAAATTCATATGACAGATGATGCCATCCAAGACATACTGGCACAGACGGAGTCAGACCCGGCATTTCAGGCTCTCTTTGACCTCTTTGACTATGGTCTCACTGATAACCTTTCATCTCTTTTTAAAGGGAAAAGTAAAACGGCTGAAGGCAGTGAACAGGCTGATGGGAGTTTCAGTACCAGTACTAGTGCACAGGAGAGTGATGAGCCCGGGCTCGTAGACAGTGCCTCTGAAACAGCTCCGCAGCCACGTATTATAACCAAACAAACTGCACAAGGATCCACAAACTCCAAGAGAGGTCTAGTCAGGACTAGAGTTTTATCTGGCAATAAACAATCTAGAGGTGCCACTACAACTTCTCCAAGGTTAAACGATAAAGCGGATTTACGTCCACCTGACCAAACCGTATCAAGCTCCTCTTTTGCAGAGGAAGGAGTTGGCATGGAGATAGATGAACCAGAAAATGAAACCTCTGAGAGAGTAAATGTTCAGAATCAACAGCCAGTTCATCTGGAAAGCTCTCACACAACCGAAACACTCAATGATAATGCAAGCAGTCAAATTCTCGTATCAAATAAGACACCACAAACCACACCCACTACTGAAACCTCAGATAATACATCAGTCAATGAGTCTGAGAGAGTAACAGGAATGACAATCGGACAGAATGTGGATATGGGAACCTCTTTATCCATTCAAAGTGACGCTGCGCCCTCACTTTACCCACCTCAACCTGACATAGACGCATCCCCCAAAACAGCTTCTCTGCCTTCCTCAAATAAAACGCCTTTAACTCCTTCCTGCACACAAACTCAGCCCAACACTGTCAGGAACGATCTCCCTACAGCAGGTTCTTCATCTTCCGCCACTACGCCGATTACCTCCACGTGCGTTTCTGATGCCCAGGTCAAGGATCCTGACCCCAGTAAGATTGTCTCTCTGAAAATCATCATCAGTGATGAGCAGGATGAGCTCCCTGCTGATGCAGCACTGAACCAGGCTGTTTCCAGCATCACCAGTGACCACATCCCCACCATCTTCCTGTCCTCCCCTGCCAAATCGCCTGCCAAGACTTTGCCTGCAACCCCTACGGTCATAACACAAGAGGAAACGGCTCAGGCCGTGAGCTGCTTGCAGGGGGCGGAGGGTGTTGGATCATTTGGAACACCTACGAGGAGCGTGCAAAATAACGGACAGGCTGCACTGGCACGTCCCGCAGGTCAAGAAACCGGTTTTATTCAGCTGTTGCAAGCCAACCCCACCTTTGGGCCTTCAGGCGGCTATTTTGTCGTGACCGATCCGGCCGCTGCAGAGCAGCGGTCAAATGTCATGCTGCTTTCAAGTAATGTGCCTCAAGGGACTCTGTCTTCAATGCAGCATGTGGTAGCGACGCCACCTCGCCAGAGGACTGTAGTGTCCGTGGGACCAAATGTCTCTCAGACATATTCGCCTGGCTCCACAATCATTATATCCTCACCAGTTCCGCCCATGTTACAAAATGTAATGCTTCCAGTGTCTGTAATGGGACAGAATACTGGAAAACTCACAGTTCTTCCCAATCAGATAACTTTGCCATGTTCAGCCACTGTAAGGCAACCTGCAAAAGTTATTTCTCAACCTAAAATGGCACCCAAGCAAAACACTGACATGGGCAAAACTGGCACAACTGGGTCCGGTCAAGTTTCAAAAGTGCTACCCCAGATGTCTGAGCAACAAAAGTGTGGGAGTGGAACAAGCCCCAGCCATCGTCGGATACTTTGCTTTGACGTCACACCCGAAAACTCAGCAGCTGGGCAGAATTCCTTACAGACAAGCACACTCGCGTCCTCTGCTGTTACATCCTCCCCAACTCAGCAAATTCAGAAAGAAATCCCACCCACTGAACCGAAACAGCCTTTAACTTCTGACAACTGTAAAAGAAGAATAGAAACGATTAGATTGCCAGAAGTACATCCCAATGCAGGTATAAAGAACTCTGAAAAAATCACCATATTTCATCAACAAAAAGCCCCAAAAAGTAGAGTAACTGAAAAGGGACTAAATCTAATCATTGTAAATAAGTCTTCCAACAAAGCTGCGACTGAGCCAGAGTCTCACATTAGATCAGAATCACTGAAAAAATCACAAGCATCACAGGAGGAGAATGGCGGAGTGGTTTCACAGAGTTCAAAATCATCTGCTCCGGAACCAAAGCAGAAACCAGTAGGCAACACAAAGGACAGCACACAGGAAGAGTCTCGTGAAAGTAAGCTTTTAAAACCAGCTGAGAGATCGTCAGAGAAAACAACCTTACAGGACTCTCCAGGCATCACTGCAAATAAAGAAAATGAGCTGGAGAGCTGCCATCATCAGACATCTGCACGCCCCACTGAGGATCTTGTATCTTCTACAGTCAAATCGGCGGCACCTGTATCGAGCACTTCTAATAAAACTTTATGCAAGACGAGCCCCCTAACTAAACAAGCTGCTGAGATGCTGCAGGACATACAGGGCCAGGCTCCTGCGGCCACTCCGCCGAAGAGACAGGCAGCGAGAGGTCCAGATCTCCCTCTCCAAAGAACACCTGGACCAGGACGTGCACAGGAGGAGCAGACAGATGGATTGAGAACCCCGTCCCGGCAAAGACTTAGGAGGGAGGGTGAAAGCACGCCGAGGCATCTCCCCCCTCCCGCCACACCCGATATCCCCTCCTGCAGTCCCGCCAGCGAGGCGGGGAGTGAGAACAGTATCAACATGGCCGCCCACACTCTCATGATCCTGTCACGCGCCGCCAGGACAGGAGGTCCTCTGAAAGACAGCTTGCGTCAAGAGGAGGCCAGTGCTGGAAAATCTGCCATCCCTAAAGCAAAGAAACGGAAGCAACTTGAACAAAGCCCTCCTGCAAAGAAAGAGCTACAGCTTTCCAGCTCCTCAAGCAGTAAAAAGAAATCTAAGAAACAGAAGAAGCTGCTGGACTCCTTTCCCGATGACTTGGATGTGGACAAATTCCTGTCATCCCTGCACTATGATGAGTAACGATGCTGAGGACGAGCCGTGCTGCTCGCCAGCATTTCAGGGACATAACAAGCCATGTGTGCTACTGAGAGCGATAAAATGGATGTATTCAGCAGAGTTACCGATTCTAAATAGCTGCTTTCTGTTTTACATCCAGAATGTGAGATATTGTACATATACACCATATTAGCCTAGTAATCATATGCATACTTTAAAGATGTTCATATGCAGGCCCAGACTATTTCATCACTCTTCAAAACAAAAAAGGAAGTAATTTAAGACTAAACTGTAATTATTGACTATGTATGTGAAAGAGTGTCAGATCAGTTGTTTCATTGCAACAGCTATTTTGTTCATTTCGGGGTTTTTTTTTTTTTTTTTTTTAACTGGACCTTTTCCATCAGCTGTACCATGTGACTACGTTTCTGTGAACATAATTTCCTCTGTACAGCCTCTAGGTGGTATTCTTCCTTTACAGTATTGAGAGGGAAGTTAAATGCTGTTTTCTGTTCTTTAGATGGTTTATTATTTTATGATGTATTTTAATAAA

Function

symbol description
npat Predicted to enable transcription coregulator activity. Predicted to be involved in regulation of transcription involved in G1/S transition of mitotic cell cycle. Predicted to be active in nucleus. Orthologous to human NPAT (nuclear protein, coactivator of histone transcription).

GO:

id name namespace
GO:0005575 cellular_component cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000072_02041267_02050950.mRNA True 6618 mRNA 0.39 17 2040738 2053184

Neighbor

gene id symbol gene type direction distance location
CI01000072_01987945_01988280 NA coding downstream 51965 1987274 ~ 1988773 (-)
CI01000072_01973002_01985111 NA coding downstream 55494 1972896 ~ 1985244 (-)
CI01000072_01946903_01949124 NA coding downstream 91614 1945288 ~ 1949124 (-)
CI01000072_01901888_01919435 NA coding downstream 121265 1900924 ~ 1919473 (-)
CI01000072_01854562_01862622 NA coding downstream 178050 1854334 ~ 1862688 (-)
CI01000072_02074797_02106818 PAK4, AIFM4 coding upstream 20803 2073987 ~ 2106873 (-)
CI01000072_02306739_02309704 NA coding upstream 253462 2306646 ~ 2309704 (-)
CI01000072_02400147_02401427 NA coding upstream 346585 2399769 ~ 2401427 (-)
CI01000072_02483888_02489835 NA coding upstream 430642 2483826 ~ 2489855 (-)
CI01000072_02497534_02504872 NA coding upstream 443925 2497109 ~ 2505039 (-)
G285762 NA non-coding downstream 17975 2003840 ~ 2022763 (-)
G285877 NA non-coding downstream 73448 1967012 ~ 1967290 (-)
G285872 NA non-coding downstream 79929 1960520 ~ 1960809 (-)
G285871 NA non-coding downstream 81679 1958738 ~ 1959059 (-)
G285743 NA non-coding downstream 101420 1937606 ~ 1939318 (-)
G285753 NA non-coding upstream 239 2053423 ~ 2058998 (-)
G285887 NA non-coding upstream 15931 2069115 ~ 2069358 (-)
G285888 NA non-coding upstream 16630 2069814 ~ 2070136 (-)
G285903 NA non-coding upstream 73893 2127077 ~ 2127391 (-)
G285745 NA non-coding upstream 132895 2186079 ~ 2186324 (-)
G285766 NA other downstream 32429 2005551 ~ 2008309 (-)
CI01000072_01596829_01610605 NA other downstream 412843 1594111 ~ 1627895 (-)
G285534 NA other downstream 685806 1335507 ~ 1354932 (-)
CI01000072_00281180_00284855 NA other downstream 1756459 280703 ~ 285182 (-)
G285752 NA other upstream 114864 2168048 ~ 2170658 (-)
G286005 NA other upstream 940585 2993769 ~ 2999495 (-)
CI01000072_03972493_03983836 SPA17 other upstream 1917086 3972401 ~ 3983836 (-)
G287021 NA other upstream 2332961 4386145 ~ 4394223 (-)
G287264 NA other upstream 3327536 5380720 ~ 5382001 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location