CI01000072_03270542_03289988


Basic Information

Item Value
gene id CI01000072_03270542_03289988
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000072
NCBI id null
chromosome length 5473029
location 3270479 ~ 3290190 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000072_03270542_03289988.mRNA
AGGTTGAACATGACTTCCGTAAAGTGAGGCATTGTTGAATTTCAAAATAAAAGTCACAACGGCAATCGTAGAGTACAAAATAAACGCTTTTTAAAAACTTTTATTTTGAAAATGTAGTCCTAGAAACGGAAGTTAACATGAACACAGTAAACGCGATATCGTTTGTGTTATTTAATTATATTGCAATTATTGAATGAGCACAATGGTGGAGTATGAATTATTTCATAAACAAACTGTGTCTATAATGACACTGTTGTCAGAAACAGCTCGAGACGAAATTCAGAAAGTTTTTGACTGTGAATGTCGCCCATCCCACACTGAAATTGGTAGTGACAGAGAAAGCAGACTGGCAAAGCTCACAGCTGTGATGGAGACCTTTACCAACGTGGCTGTTCAAAAAATATGCAAAGTCTTCAGTTATTGCTTTGCTCTTAAGCCAGCTCAGCTGAAGGGTTATAAAAGTTACCATGATGATGTAGTACATGTGAAAGAGATAATGAAGGAGCACCTGAAGAAACCAGAAAGAAAAAACAGTCAAACTGTTGAATACAGTACCATTGCCTCTGTTGAAGACCAGCAACCTGAAGTAAACCCACAGGCAGAGCAAATCAGTACAAAGCCCGAGAAAACCAAGAAGACAGTATCATTTGACTGTAATGAGTGCGGAAAGAATTTTCTCTGGAGACACTCACTAAATCAGCACAAATGTGGACATTTAAAAGGACCTCACAGTTGTGAGCAGTGCGTTGTGGTCACTATGTCCAGATATCAAACTACTCTATTCATCTTATTAATGCCGGACACGCCAAAGCAGAGCACACCAAAGGCATGCAGCTCTGTTGAACCTCATCTCAACATGAAACAAAACGACACTCAGACTCACATGCCTGCACAGGAGAATAATGCAAGTAGATGTCTTTTGGTGAAGGACAGAGCAGAAGAAAACATTCAGACTGTAGTCATCGGTGATGCTGATGACAGGCGCTGTTCTGAAGATCAGGAAGGCGTGTCGCAGACATCGATTGAGCAACCTGAAAAGCCACAAGACAAAGAGTCTTTTGCATCTGCACGTTTCTCAACTGTGGTCACTATGGCCCGGTATGAGCTTTTTCAGAGTCAAACCACTCTGGTCATGTCATTACTGACGGACACTGCTAAGCAGGAGATACGAAATGTTTTTACATCCAGCTACGATGAATCTCATCTCACCATCAAACCAAACGATTCTCAGATTCACATGCTTAATTCCATAATGGAGAGGTTTGCCAAAGAAGCAGTGCAGAAGATTTGCAGTCTCTTCAGATACTGTTCATCTATTTCACCAGTTCCAGCACAAATGTGTTTGAATGGCCGAGATGACATAAGAAAGACTTCATCTCAGATGGGACGTGATCTCAGTGGAACAACATGTATCCAAAACCAAGAGTTTCAGGGAGATGCTATATCTCTCTCTGTGAGTCCTCTGAATGAGCTTTCATCACTGTCTCACCAGCAACCTTCAAGCACTGTGCATGAACAGGACAGTAAGGCAAGCCAGTGTCTTATGGTGGAGGACAGAGCAGAAGAAGCCATTCAGACAACATTCATCAGTGAGGCTGCTGATGACATGGGCTGGTCTGAAGATCAGGAAGGCGTGTTGCAGACGTCAACCGAGCAACCTGAAAAGCCGCAAGACAAAGAGTCTTTTGAATGTGAGCAGTGCGGAAAGTCCTTTCCAAAGATGTTTTCTCTTGTGCAGCACAAACGTGTGCATTCGATTACGCTTGTAAAGGCAACGGTAAAAGAAATGACTAAATTCGTGGACATATCAGGCACACCTCCACTGACAGAAACTACAGCAAACGAGTCTGCCACCCCAGACTTTGCAACCCATCTGAACTGTGTGTTAGAACGTAACGCAAAGGAAGCTGTGGAGAAAATATGCCAGCTTTTCTCTGCACTTCAGCATCTTGAAACGAGCCAGAGTGCACAGGATGGCTTGAAAACAAGACTAAAGCAAGTTGAGAAACGGCAGAAGACTCTACAGGGAGAGACTCATATAACCAACGATGCTCTCCTCAAAAGTCAGTCCAGTGACCAGCTTACTCTAGTGTCTGGGGAGAACATAGATGTGAGCTGGGCGCAGGAGGAGATCATAGACACTGAGCATGTGAAAACACCCACTAAAACACAGAAGACGGGGATCATTAAGGACGACAAGTCAGCAGATTTTTCAGAAAACATCAACCATCCTCGGTTTGTGGCTTTGCAGGAAGATATGATACTTTGGGATGATACTGTGGAAGATGATGAGGAAGAATCTAGAATTTTGAGCGTTTTAAAAAGCAGAAGTGTTCAATTGAGATGTCGGAAGAAAGGCAAAGCGTTCAGCTGTAAACACTGCAGAAGGAAATTTGACTCGCTTGTTCTGTTGAGAGCTCATCGGGTCGTTCATGGATCTGTGAGCTTTGTTAATATGCTGATGATTTTTTCAGTTCTTCAGTATGATATAAACATTAGTTTCCTTCAAAAATCTGTTTAATGTAGAATTGATCTTCAAATTTATGTGAAATGAACTGTAAAGCTCTTTGTTATGACAAATAAA

Function

NR:

description
Zinc finger protein 235

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000072_03270542_03289988.mRNA True 2584 mRNA 0.42 16 3270479 3290190

Neighbor

gene id symbol gene type direction distance location
CI01000072_03210624_03244667 MARK4, MARK4A coding downstream 25812 3210219 ~ 3244667 (-)
CI01000072_03189624_03195527 KLC3 coding downstream 74952 3189551 ~ 3195527 (-)
CI01000072_03144427_03154133 SAE1 coding downstream 115384 3144318 ~ 3155095 (-)
CI01000072_03114079_03114839 IFT20, IFT20.S, IFT20.L coding downstream 155640 3113724 ~ 3114839 (-)
CI01000072_03049529_03055114 NA coding downstream 214897 3048002 ~ 3055582 (-)
CI01000072_03330998_03335358 NA coding upstream 40627 3330817 ~ 3335358 (-)
CI01000072_03379532_03381460 NA coding upstream 89133 3379323 ~ 3382542 (-)
CI01000072_03396929_03398233 RNF26 coding upstream 106457 3396647 ~ 3399019 (-)
CI01000072_03455112_03462887 CBL coding upstream 164481 3454671 ~ 3462887 (-)
CI01000072_03497623_03625293 GRIK4 coding upstream 207433 3497623 ~ 3625293 (-)
G286186 NA non-coding downstream 91600 3177534 ~ 3178879 (-)
G286182 NA non-coding downstream 100997 3169263 ~ 3169482 (-)
G286173 NA non-coding downstream 144918 3125336 ~ 3125561 (-)
G286026 NA non-coding downstream 149210 3120097 ~ 3121269 (-)
G286172 NA non-coding downstream 150478 3119761 ~ 3120001 (-)
G286266 NA non-coding upstream 19018 3309208 ~ 3309424 (-)
G286227 NA non-coding upstream 57337 3347527 ~ 3347813 (-)
G286272 NA non-coding upstream 61275 3351465 ~ 3351757 (-)
G286273 NA non-coding upstream 61591 3351781 ~ 3352495 (-)
G286276 NA non-coding upstream 63835 3354025 ~ 3354567 (-)
G286005 NA other downstream 270984 2993769 ~ 2999495 (-)
G285752 NA other downstream 1099821 2168048 ~ 2170658 (-)
G285766 NA other downstream 1262170 2005551 ~ 2008309 (-)
CI01000072_01596829_01610605 NA other downstream 1642584 1594111 ~ 1627895 (-)
G285534 NA other downstream 1915547 1335507 ~ 1354932 (-)
CI01000072_03972493_03983836 SPA17 other upstream 680080 3972401 ~ 3983836 (-)
G287021 NA other upstream 1095955 4386145 ~ 4394223 (-)
G287264 NA other upstream 2090530 5380720 ~ 5382001 (-)

Expression


Co-expression Network