CI01000072_03844170_03870555 (ARHGEF12A)


Basic Information

Item Value
gene id CI01000072_03844170_03870555
gene name ARHGEF12A
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000072
NCBI id null
chromosome length 5473029
location 3843492 ~ 3870555 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000072_03844170_03870555.mRNA
GGCTGGTTCAGAGATGTGTGATCATTCAGAAAGATGAGAACGGCTTTGGGCTGACCGTCAGTGGGGACAACCCTGTTTTCGTACAACTCGTCAAACAGGATGGAGCTGCCATGCGTGCAGGTGTTCAGACGGGGGACAGGATCATTAAGGTGAACGGGACCTTGGTGACACAATCAAACCATGTGGAAGTGGTGAATTTAATCAAATCCGGTTCTTACGTGGCCCTCACAGTATTAGGCCGACCTCCGGGGTTGCCCCAGATCCCCCTCTCTGAGGTAAATGTGGGTCTCGGGTCACCAGGGTGTTTCGAGGACCCTTTTGTTACATCTCCCAATTCTTACAATGCAGTGGAACGCACCTCCTCTCCCCTTGTACCATGGGGACTAAGGGAGGACTACAGCAGAACTCCTACAGCCAAACCACTACGGGATATCCAGGAAGCCAAGAAGCACATTCCACATCAGCAGGGCCAGCTCAATAGGGCTACACATGAGGGTCTGTGTCTCAGGAACAGTGAAGATGGCTATTGGGTGGATGAGGATCAATATAAGGGAGATTTTAGCCCGGAGGGTTTCTGGAGTGGAAGTTCAGTATCAGCTGTTCAGCGCCAGTTCTGTCCGGCCTCTCCAGAGAGCCAAAGGGACTCCAACTGTTCCAGTCCAAAGAGCACCCCCAGAGACAGCCTCAACTCCTGCCCGTCCCCTGAGGTCGAGGACGGCTCTGACCTGGATTCTCGTTTCCAGTCCTCCATAGGGAGCCCACCCTCCCGCCTGGCTTCGGAAATCATTGCTGCTGAAGATGATGACTTTGACACAGAGCAAGAGCAGGTGAATGGCCAGTGCAGCTGCTTCCAAAGTATCGAGCTGCTCAAGACTCGCCCCGCTCATCTTGCCGCCTTCCTGCACCATGTTATCTCCCAGTTTGACCCTGCGCCTCTGCTTTGCTACCTGTACGCTGACCTCTACAAACAGACTAACTCCAAAGAAATGCGCCGCATCTTCATGGACTTCTTGACGTTCTTCATAGACCGGGGGGCAAATTTGAAGGTCGCTGTGCCTGAATCCATCTCCACTGAGCTCGAGCGGCGGAGACCAGAGCTGATTCCTGAGGAATTACACAGGCAGTATATACAGACAATGCAGGAAATGCTCCTTCCTGATGTTCAGAGAAACTTGGAGGACTTCAGGCAGAAGCGCAGTATGGGTTTGACCCTGGCTGATGTAGAGCTGTCTCGCCTGGACTCTGAACAGCTGGCTGTAGAGAGAGAGAGATCCTGTGCTGAAAACATCCTCTCCAAGATAGATGACATTCTGTCGAGTTCACAACCCACAGAAGAGGAGAAATGCACCACGATACAGTATGTGATCTTCATGTACATGAAGCATCTGGGAGTGCGGGTGAAAGAGCAACGAAACCTGGAGTCCAAACGAGTTCGAATTAATTTCCTTCCTTCCAAACTGAGGAAAAGCAAAACAGAAAAGGAAGGGGAGGAGAAACTGAAAAGACCTCGCTTCCCCATCCGGGTTCCCCCGCGGTGGCCCAGTCGCATCGATTCGGTACCGTCTGGGAGGGCCGGGGACAACATCAAGCAAAGGCCTCTGAAACAGATGTCTCAGCCAGCGATGGGTGGGTCAGACTTGATAGAGGGTGGACGTCTGCGGGGCAGTCAGTCGAGTGAGGGCTCAGACCTCTTACAGAGCCCGGGGTTGATCACCTCTCCCCCCTTCAATACCTCTTACAGCTCACCAACAGACCCCTCTGTCAGGGACCCAGAGTTTAATATGAGCCCATCTGCAGTGGTTCCCCGGCTTAGTGATGGGGTGCAGTCTGGAGATGTGCTGGACAGCATCTACCCGCCCTGTGACTACATCCCATACAACATGGACCAGCTAGATGAAGACAGAGATGGAGACAGACTCCTTGATGTGGGCACACCTAAACTCAGTAGAAGGTTTGAGGAGCTGCAGAGTGAGGATGATCAGGGGAGTGATGTTTACTCTGATGTAGATCCTCCAAACTGGCAGCAGCTGGTCGGGCGTGATGTTTTAGCTGGCTTGACACCCCACGAGATCAAGAGACAAGAAGTCATTAATGAACTGTTCTACACGGAGCGAGCCCATGTACGCATGTTGAAGGTCCTAGACAGTGTCTTCTACCAGAAACTCACCCGAGAAAACATACTGCCCCCTGCTGACATCAAGAACATATTCACCAACCTGGAGGAAATCATCCAATTGCATATGAGGATAGCGGATCAAATGACAGCGATACGCAAGAAGAACGAGTCGTCAGTCATCGACCACATAGGAGATGAGTTGTTGTCTTGGTTCAGTGGTGGAGAGGAGGAGAAGATCAAGCAAGCAGTGGGCACTTTCTGCAGTAACCAGCCCTTCGCCCTGGAGCTCATCAAATCCCGGCAGAAGAAGGACCAGCGTTTCACCTCCTTCATGCAGGAGGCTGAAAGCAATCGCCTGTGTCGACGACTACAGCTAAAGGACATCATCCCTGCAGAGATGCAGAGGTTCACTAAGTACCCCCTACTGATGGACAACATTGCCAAGTACACAGATGAATCAGGAGAGAAAGACAAAGTGAGACGATCAGCCGAATGCTGTCGACAAATTCTCAACCACGTCAACCAGTCTGTGAAGGAGTCCGAGAATAAACAGAGACTGGAAGACTACCAGAGACGGCTGGACCTCTCTTCCCTCAAGCAGAGCGAGAACCCCATGATCTCAGAGTTTAAGAATCTGGATCTCACTAAAAGAAAGATGGTCCATGAGGGTCCTCTGTCCTGGAAGATTAACAAAGACAAAACTATTGAGCTATATACTTTACTCCTGGAAGACATCCTGGTGCTGATGCAGAAGCAGGACGAGCGTCTTATTCTCAGGTGTCACAGTAAGAACCTCGCAGGAACGGCTGACACGAAACACATATTCAGTCCCATCATCAAGCTCAGCACTGTGCTGGTGCGCTCAGTGGCGACAGATAACAGATCATTTTTTGTGATCTCCATGTCCAAAAATGGAGCTCAGATCTATGAGCTGATGGCCCAAACAGTGTCCGAGCAGAGAATGTGGCAACGGCAGATCGCCCAGAGGGCAGAAGTTATGAACGCCAAACCACACAGCGTCATTCCTTTGCCTCAGCACGATGGCGACAGAGACGGTGTCGAGTTAAGCAAGTTCAGCAAAGGCTCTGAACGGATCTCCACAGGAAGCATCCAGTCCGCAGAGAAAGACGGTGAATTCTCGCCCTCGGCAGCCCTGCGGGACTGTGTCCCAGACTCCAACCCTGGGGAAGAGGACCAGGTCCCGAGAGCTGGCAGGGATGGCTCGTATCTGGACTCTGAACTCTTGAACGGCAGGGACGCAGACTCTCTATCCTCTTCATCTAAAGCAGATGAGGCCCTTAAAACCTTGGCGGCGCTGAAGCAGGTGTTGGTGACTCAGCTGATGGCTCAGGATGAGGGCGAGCGATTGGGCCGATCGGCCGGCAGTCGTCTCCTCAGGACCACCTCTCTACGCACACCAGTGGAGCACAGCTCTGCTCGCACCCCTAGTCGAGCTCAGGACTACACTTCTGGAGATACGGGCTTCTACGAGTGCCCAGAAGACTACGCAGCCTACCTGGTTCTGGAGGGGTACGGCGGCTCAGGCGAGAGCAGCACAGATGACGATATTCAGGTCGGGAGAAAGGAGCCAAGTTTGGCACACAGCTGTGCTGCCGACTCGGGCATCAGCCTAAAGTTCTCCTCGCCCTCCTCAGGCAGCACGTCTCGCCTCAGCAGACAGGTCCTCTCACATCTTCGCTGCCTGCAGGCCAACCTCAACCACCTCAAGATAAGAAATAGAGTGGCAGAAGTTCCCGGCTCCTGTGATGACGGGGGCATCGCTTCTATCCGTAACATGCTCCGCACAAGCCTGTCTTCCTCACTGCTGAACACCTCCATCCAAAAATGAGCGGAATATTCTAACAAGGCCTCTTGCTTCTGTCAGCACTCGTCAATTAGGGAAGACGGACTGTCTCCTCTCAGCCTTACCTGTCCCGAGTACATGTCCTCATTCCAGCGAACGTGGGCAGCCCAGTCCTCTCCTTCCCCTGCAGACTTAGCTAGAAAACTGAGAACTTTACCAAATTGTACAAAGCTGTGTGTTTAAAATATATATGTAAGAAACACAAGTTGAGAAAGGATTTTTTTTTTAAACTAATGTATTAAGGTTTTTTTTTCCTTTTTTAAATCCCAAGATGTATTTATTTTTCATTTTAGTGTTTTCCGTGTTTCTCGCATGCTTTTGGCTGTTGAAACTCTTAAGCCGTCTGTCGCTGTAGGCTTCAGTATGACTGAACAGGGCGAGTGCTTCAGAATTCAGACTCTTTTCTCCCCCCACAATTTTTTGTGTGGAAGCCCATGTCTGTGCAGTACATGAAGAGAAGTTTTTGCTCAAGGCCTCTCTGTTCCTTCAGCCAGCTGACATTCCTCCCAGAGCCCTGGACTCGTTCATTTGCCCCTGAGACCCTCCTGCTGAGATGAAGAGTGGATGGAGCTCAGGCTCTCCTGGTCTGCAACTACATTTTGATGACTGCAAAAATAGAAAATTAACATCAAAATGGAAAGTGATGCAAAACCAAGAAATAAA

Function

symbol description
arhgef12a Predicted to enable guanyl-nucleotide exchange factor activity. Predicted to be located in cytoplasm and membrane. Orthologous to human ARHGEF12 (Rho guanine nucleotide exchange factor 12).

GO: NA

KEGG:

id description
K07532 ARHGEF12, LARG; Rho guanine nucleotide exchange factor 12

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000072_03844170_03870555.mRNA True 4643 mRNA 0.51 35 3843492 3870555

Neighbor

gene id symbol gene type direction distance location
CI01000072_03788767_03792874 NA coding downstream 49764 3788170 ~ 3793728 (-)
CI01000072_03497623_03625293 GRIK4 coding downstream 218199 3497623 ~ 3625293 (-)
CI01000072_03455112_03462887 CBL coding downstream 380605 3454671 ~ 3462887 (-)
CI01000072_03396929_03398233 RNF26 coding downstream 444473 3396647 ~ 3399019 (-)
CI01000072_03379532_03381460 NA coding downstream 460950 3379323 ~ 3382542 (-)
CI01000072_03898250_03900844 TMEM136A, TMEM136 coding upstream 27610 3898165 ~ 3900844 (-)
CI01000072_03908090_03922942 NA coding upstream 36832 3907387 ~ 3922942 (-)
CI01000072_03941680_03952617 PDE9A, PDE9AL coding upstream 70776 3941331 ~ 3952617 (-)
CI01000072_03959944_03964339 NA coding upstream 89364 3959919 ~ 3964616 (-)
CI01000072_03972493_03983836 SPA17 coding upstream 101846 3972401 ~ 3983836 (-)
G286256 NA non-coding downstream 1430 3841670 ~ 3842062 (-)
G286236 NA non-coding downstream 341277 3501101 ~ 3502215 (-)
G286249 NA non-coding downstream 370441 3393763 ~ 3473051 (-)
G286219 NA non-coding downstream 407293 3410662 ~ 3436199 (-)
G286290 NA non-coding downstream 452114 3391163 ~ 3391378 (-)
G286867 NA non-coding upstream 182496 4053051 ~ 4065995 (-)
G286873 NA non-coding upstream 196381 4066936 ~ 4067174 (-)
G286874 NA non-coding upstream 197038 4067593 ~ 4067795 (-)
G286877 NA non-coding upstream 210427 4080982 ~ 4081213 (-)
G286005 NA other downstream 843997 2993769 ~ 2999495 (-)
G285752 NA other downstream 1672834 2168048 ~ 2170658 (-)
G285766 NA other downstream 1835183 2005551 ~ 2008309 (-)
CI01000072_01596829_01610605 NA other downstream 2215597 1594111 ~ 1627895 (-)
G285534 NA other downstream 2488560 1335507 ~ 1354932 (-)
G287021 NA other upstream 515590 4386145 ~ 4394223 (-)
G287264 NA other upstream 1510165 5380720 ~ 5382001 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
bowfin (Amia calva) AMCG00004524 NA coding CM030121.1 CM030121.1 52623406 ~ 52665227 (-)