CI01000072_04796909_04805902


Basic Information

Item Value
gene id CI01000072_04796909_04805902
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000072
NCBI id null
chromosome length 5473029
location 4796780 ~ 4805902 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000072_04796909_04805902.mRNA
GAAACTTGCAGAGGAAACAAAGAGAATTGGAGAGCCCATTTTGCTACAGAGACTGGACTGGATCTTTTCTGTTCCAGAAGTACAGAACTAACCTGGACCGGTGGCGTGGTAGGAGAGGGGGTTCGGTTTTGGTCGGTCCGTGCTCAGCTCAGAGTCTCAATCCAGCCGGGAAAAATGTCTGCCTCAGTATCAGCCCTCTGTGAGGGTGAAAGAGCCTGTCTGCACGATGAAGTGTGTGTTCACCCTGGATTTTGTCGATGTAAACCTGGATTTTACGGGTACCAGTGCAAAACCCGTTGTCCTTCTGAATTTTGGGGGGCGGATTGTCGTGAGCTTTGTCCCTGTCACCCTCATGGGCTCTGTGACCCAGTCACAGGTGAGTGCTCGTGCCTGCCTAACCGCTGGGGCAACCTGTGCCAAAACAGCTGCAAATGTACACGTCATGGGAAATGTGACCCTGTCTATGGCAACTGCACTTGTGAGGAGGGCTGGTGGACATCCACTTGCTCCAAAGTCTGTCAGTGCCACCTTGCTACATCCACCTGTGACCAAGCCACAGGCCGCTGCTTGTGTAACGAGGGCTACTGGGGCCAAAAGTGCAGCCTGCGATGCAACTGCTACGTGTCCCCCTGCCTGCAGCGCACAGGGGAGTGTCAGTGTCTGCACGGCTGGTGGGGTCCATCCTGTGACCGCCGTTGTAATTGTAATCTCAACCATGCCGACTGTGACTTGCAAACTGGCACCTGTTTGTGCTACCCGGGTTACAAAGGCTCTGTCTGCAATGAGCCTTGTGAGAGTGGAAAGTACGGCAGTGGCTGTAAGAAGAGCTGTGGACACTGTGAAGGGGGCAGGTCTTGCTCTAAACAGGACGGCCTGTGTGATGCTTGTGCACCAGGGTGGAATGGCACTCGCTGTGACCAGAGCTGTCCTGCAGGTTATTATGGCCATCACTGCCGAGAGGTTTGTCCGCATTGCAGAAATATGGACCCATGTGACCCTGAAACTGGAGAATGCTTACAATGTGATCCTGGCTGGACTGGACCAAGATGTGACAAACCCTGCACAGATGGTACTTATGGAGATGGCTGCCGCTTCCTGTGTAAAACCTGCAATCATGGCCACTGTGACCATGTGACAGGAAGTTGCATTTGTCTTCCTGGCTTCCAGGGTGAGAGAGTGGCGGTTGGGGATGGGAGCCCTACAGTCCGCATGAAGCATCATGTTTATACTGTGTTGGCCAACATGGGTTCAGCCATGCCGTGCATGACTCTTTGGTCATCTGGTTTACCCAGGGTTACAGTCTCTCATCATGATCCTGAGCTCACATTTAACCACAGCTTCATTGAGCAGCCATCATCCGGCTGGGTGACTGATTCATTTGAAACTGATGATGAAGGAGAGGCCATCTACTGTGAACCGCCCAGGGAAGATGTTCTTACTGTGGCCAGTGGAGAGCTTCAGGAACTGAACTCCAAGTGTAACTTCTTCCCTGACCCATCAACCTTCAGCAGCGAGGACATGTCACAAGCTTTTGGTATCCCTCGTACTTCTAGCATTGCCAAATCCAAACGACCTTCAGTCTCTTTCGCAGAGGGCACAAAGTTCAGCCCTAAAGAGCGCCGTAGCTCGACCCAAGATCTGCCAGGAGCTACTCGGAAACCCAAAGCCTGGGGTGTGCTGATGATCTCTGCCCTGCAAGGAGGACAGGGAAACCATAGTGAGATAGAAACAGAAAAAGAAGAAAAAAACAATGAGGAGAACATCTCCGCTGAGGAGCAAGCAGCTGCCTCTGAAACATCACAATCCGACTCGGAAAGATATAGTTCTGGCCCACTCAGGACTTACCTCACTGTGCCCGGTGGGAGACGACGCACACTTTCCAATACCAAGAAGAACACCCAGCCATCTGATGGCAGCCAGGATGCAGATTCAGAGAAGTTAACAACTGTTTATGTGACTGTGGGTAAGGCCCAAAAGATGGCTAAACAAGAGCCTCCTTCGGAAGGGCCCGTTCAGGCGATGCTGCGCAGACTAGGCAGCCTCCAGAGACAAAAAGAGGAGGCCGCTCAGCCCAAAGGCAGAGGGCAGGCGATTGCCAAGCCCCCGCGGAGGAAACTGGGGGCACGGGCCAGTGCCTGGGAGCAAACTACTGGGTCAGGCCAATCAGAGGTGGTCATGAGGAAACCTAGTCGCAGGAAACACAGCTCCCTCAGCTCTCCCTGCACAGTAGGGGCAACAGACTTTCCTCAGGAGAACAGCACTCCCAAGCGGCCCTTGTCCTCTATTTTAAAAAGTGTTCCAGAGAGCGAAATGCTCCACAATTTAGGGGTGGAGCAAGACACTGAAGTAGATTGTGAGACAGAGACTCTGACAGACCACGCTTATGAGACTGTGGCTCCGTCTGATGGGGTCTCCACCTCTTCAGAGATTATTATTAATGAAACAGTTATGGACCAAGCAGAAAATGAGCCGAGTTATGAGAATGTTTATGTAAAGCATTCATAATATTGCTGAACCTTAAAGCAATAATTCCCTTTTAAGTAGTACTGTATGTAAATTTTGCATAAACTGCATAAACATATCTACATCAAAAATTTTGTTTGTTCATATAGTTTCATTATAATTTCCATTAAA

Function

NR:

description
scavenger receptor class F member 1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000072_04796909_04805902.mRNA True 2634 mRNA 0.51 9 4796780 4805902

Neighbor

gene id symbol gene type direction distance location
CI01000072_04613981_04618187 USF1 coding downstream 178593 4613440 ~ 4618187 (-)
CI01000072_04602970_04610481 GKUP coding downstream 186299 4602849 ~ 4610481 (-)
CI01000072_04577347_04600719 UBASH3BB coding downstream 196061 4577049 ~ 4600719 (-)
CI01000072_04514012_04539785 NA coding downstream 256904 4512778 ~ 4539876 (-)
CI01000072_04315603_04316880 NA coding downstream 479900 4314911 ~ 4316880 (-)
CI01000072_04810045_04816219 RILP coding upstream 3994 4809896 ~ 4816492 (-)
CI01000072_04818513_04830986 PRPF8, PRPF8.S coding upstream 12243 4818145 ~ 4831797 (-)
CI01000072_04932845_04949502 GIT1 coding upstream 126798 4932700 ~ 4949502 (-)
CI01000072_04992647_05006768 SSH2A coding upstream 186316 4992218 ~ 5006768 (-)
CI01000072_05039232_05046122 SLC6A4A, SLC6A4 coding upstream 233184 5039086 ~ 5046474 (-)
G286997 NA non-coding downstream 335 4796091 ~ 4796445 (-)
G287111 NA non-coding downstream 25344 4771077 ~ 4771436 (-)
G287109 NA non-coding downstream 27942 4768631 ~ 4768838 (-)
G287108 NA non-coding downstream 28930 4767182 ~ 4767850 (-)
G286974 NA non-coding downstream 35433 4760801 ~ 4761347 (-)
G287129 NA non-coding upstream 34985 4840887 ~ 4841553 (-)
G286962 NA non-coding upstream 72238 4878140 ~ 4881638 (-)
G287154 NA non-coding upstream 217443 5023345 ~ 5023593 (-)
G287011 NA non-coding upstream 220219 5026121 ~ 5027092 (-)
G287161 NA non-coding upstream 325240 5131142 ~ 5140674 (-)
G287021 NA other downstream 402557 4386145 ~ 4394223 (-)
CI01000072_03972493_03983836 SPA17 other downstream 820713 3972401 ~ 3983836 (-)
G286005 NA other downstream 1797285 2993769 ~ 2999495 (-)
G285752 NA other downstream 2626122 2168048 ~ 2170658 (-)
G285766 NA other downstream 2788471 2005551 ~ 2008309 (-)
G287264 NA other upstream 574818 5380720 ~ 5382001 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_009288 scarf1 coding NC_007126.7 CM002899.2 28208440 ~ 28223906 (-)