CI01000072_04810045_04816219 (RILP)


Basic Information

Item Value
gene id CI01000072_04810045_04816219
gene name RILP
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000072
NCBI id null
chromosome length 5473029
location 4809896 ~ 4816492 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000072_04810045_04816219.mRNA
AAAATTCAGCTACAAACCTGAGCTACAAGTTATGACATGCAAGTCTTTACACTGCATAGACATGTCGATTTTATAACTCACTCGTGTTTATTAGAGCGTACCAACAAAGGATGTAGTTACAAAACAAACTGGAGCGAAAATGCATGCGTTTAAAAGTGAAACAAAAAAAGATCTGCGTTCGAGCTGAATCACAACTGGACGAATGTTGAGATCTGACTGACAAAAGGAGTTTCGTTTGTCGCTGTTTGAGTTCAAGTTCATCTGAAGTGCATTATGGAGACTTGCGTGATAGCCGTCGAGGAAAACCAAAACGATATCGTCAAGACACATTCGTGTTTCGAGAGGACGTTTTCATCAATGACAGTGGACGATGTGTATGAAATCGCTAAATTGGTGGGGTCAGAAGTGGAGAAGCTCATCGACAGCTATGGGAAGTCGAGTGTGGAAGGACTGGTGTCTCACATAGTGAAAGTGTTGGAGCTCTTGGAGAGTTTCGCGGCGAGAAATCAATCTCATAAATGTAAGGAAGATGAGCTATTGAAGGCCTTTGAGACGTTACAGTTACAGCAGCAGAAGAAACGACATGTAAAGGAATGCGATGAGACCAGCAACAGCTTTGAGAGTCGGGACTGGTATCAGAAAGAGAAGAAACTGAAGGAGACTGTAGAAGTGTTACAGTCCCAGGTGCATCAGCTCAAGGAAGAGAACCAGGAGCTTCTGACCCGCTTACAATGCACACACTCCAAAGAAGACCGCACACAGCGTCAGGAACGAGAAGTGATGCTCAAGCTGAAGGAAGTGGTGGATAAGCAGCGTGATGAGTTGAGAGCGAAAGTTCAGGAGATATCCAGCATGTCCAAGGAGGTGGAAGCGCTCCAGGAGCAGCAGGAGCGGCTAATGAAGATAAACGCAGAGCTCAGACACAAGCAGAATATCATACAGACTCAGCTGAAGAGCGCAGTGGAGAGGAGGACCGACCTGGAGGCCGACCTGTGCGAGAAACAGAAAGAGATAGAGCGCCTGAACTCACAACTAGAAACAGCCAGCGTGAATACTGCTGCTGAAACGAGCAATTCAGCCATTGACCTCACAGATAAGATGATCATTGACTTGAAGGATCCAAATCGGCCATGTTTTACCAAGCAGGAAGTACGGGATATGCTTTTTGAGAGGAACGAGTTGAAAGCCAATCTCTTTCTGGTGAAAGAGGAGCTTGCATATTACCAAAGGGAAATTCTGAATGATGAGAGATGCCCAGGGTTCTTACTCGATGCCGTGCGCTCTGCCATAAAAAAGCAGAGGACTGTCATAAAGTCTAAAATGCTCGGTATACCTGTTAGCGAATGTAGCACAGATGAGACAGACGGCCCTTTGTTTGAGAGGAGTGGAAATGAAGACATTGACACTGACAGCAGACCCCAGGACTCGCGCATCAGAAACCTGTGAGTGCTGCACTTATGCTAAAACAAGACAGACCTATAGCAATAACTTATTTCAGTACAACAATCTACTTAAATACTAACCTACTTCACTAAAAAACGGGTTTCAGTAGAATTAGGTTATGGGATAAGCCCACCAGTCTTGGGTACAATAAA

Function

symbol description
rilp Predicted to enable protein dimerization activity. Predicted to be involved in cilium assembly. Predicted to act upstream of or within protein transport. Predicted to be active in ciliary basal body and cytoplasm. Orthologous to human RILP (Rab interacting lysosomal protein).

GO: NA

KEGG:

id description
K13883 RILP; Rab-interacting lysosomal protein

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000072_04810045_04816219.mRNA True 1595 mRNA 0.45 7 4809896 4816492

Neighbor

gene id symbol gene type direction distance location
CI01000072_04796909_04805902 NA coding downstream 3994 4796780 ~ 4805902 (-)
CI01000072_04613981_04618187 USF1 coding downstream 191709 4613440 ~ 4618187 (-)
CI01000072_04602970_04610481 GKUP coding downstream 199415 4602849 ~ 4610481 (-)
CI01000072_04577347_04600719 UBASH3BB coding downstream 209177 4577049 ~ 4600719 (-)
CI01000072_04514012_04539785 NA coding downstream 270020 4512778 ~ 4539876 (-)
CI01000072_04818513_04830986 PRPF8, PRPF8.S coding upstream 1653 4818145 ~ 4831797 (-)
CI01000072_04932845_04949502 GIT1 coding upstream 116208 4932700 ~ 4949502 (-)
CI01000072_04992647_05006768 SSH2A coding upstream 175726 4992218 ~ 5006768 (-)
CI01000072_05039232_05046122 SLC6A4A, SLC6A4 coding upstream 222594 5039086 ~ 5046474 (-)
CI01000072_05053749_05071797 BLMH coding upstream 237152 5053644 ~ 5071797 (-)
G286997 NA non-coding downstream 13451 4796091 ~ 4796445 (-)
G287111 NA non-coding downstream 38460 4771077 ~ 4771436 (-)
G287109 NA non-coding downstream 41058 4768631 ~ 4768838 (-)
G287108 NA non-coding downstream 42046 4767182 ~ 4767850 (-)
G286974 NA non-coding downstream 48549 4760801 ~ 4761347 (-)
G287129 NA non-coding upstream 24395 4840887 ~ 4841553 (-)
G286962 NA non-coding upstream 61648 4878140 ~ 4881638 (-)
G287154 NA non-coding upstream 206853 5023345 ~ 5023593 (-)
G287011 NA non-coding upstream 209629 5026121 ~ 5027092 (-)
G287161 NA non-coding upstream 314650 5131142 ~ 5140674 (-)
G287021 NA other downstream 415673 4386145 ~ 4394223 (-)
CI01000072_03972493_03983836 SPA17 other downstream 833829 3972401 ~ 3983836 (-)
G286005 NA other downstream 1810401 2993769 ~ 2999495 (-)
G285752 NA other downstream 2639238 2168048 ~ 2170658 (-)
G285766 NA other downstream 2801587 2005551 ~ 2008309 (-)
G287264 NA other upstream 564228 5380720 ~ 5382001 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_009289 rilp coding NC_007126.7 CM002899.2 28227058 ~ 28247583 (-)