CI01000072_04932845_04949502 (GIT1)


Basic Information

Item Value
gene id CI01000072_04932845_04949502
gene name GIT1
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000072
NCBI id null
chromosome length 5473029
location 4932700 ~ 4949502 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000072_04932845_04949502.mRNA
ACCCGGGCTGGAGCAGTATAAACCGAGGGGTTTTGATTTGTGATGAATGCTGTTCTGTGCACCGGAGCCTGGGCCGACACATTTCCATCGTCAAACACCTGCGACACAGCGGCTGGCCTCCTTCCTTACTGCAGATGGTGCAGACGTTAGCCAGTAACGGCGCTAACTCGATCTGGGAACACTCCCTGCTGGATCCAGCACAAGTTCAGAGTGGGCGCAGGAAACCGAACCCACAAGATAAAGTCCACCCCACTAAGTCAGAGTTTATTCGCGCCAAGTACCAGATGTTAGCCTTTGTCCACAAGCTGCCCTGCCGTGATGATGATGGGGTCACTACGAAGGACCTCAGCAAGCAACTGCACTCAAGTGTGCGGACAGGAAGTCTGGAGACGTGTTTACGGTTGCTGTCACTGGGGGCACAAGCCAACTTCTTTCACCCGGAAAAGGGCACGACCCCTTTGCATGTGGCTGCCAAAGCAGGGCAGGTTCTGCAGGCCGAGCTGCTGGTGGTGCAAGCAGGTCACGTGGAGCTCGCTGAGCGCTTGGTGGAGTGTCAGTATGAGCTCACGGACAGACTGGCCTTTTACCTGTGTGGACGTCGCCCAGATCACAAGAACGGTCATTATATCATCCCTCAGATGGCAGACAGCCTGGACCTCTCTGAACTGGCCAAGGCAGCCAAGAAGAAGCTTCAAGCGTTAAATAACCGCTTGTTCGAGGAGCTGGCTATGGATGTGTACGACGAAGTGGACCGTAGAGAGAATGATGCAGTGTGGCTGACAACTCAGAACCACAGTACGCTTGTGACCGAACGGAGTGCCGTCCCCTTCTTACCCGTCAACCCTGAATACTCAGCGACACGCAACCAGGGACGGCAGAAATTGGCTCGCTTTAATGCACGAGAATTCGCCACCCTCATTATTGACATTCTCAGTGATGCCAAGCGGCGGCAGCATGGAAAAGGCCTGACAAGCCCCACAGACACACTGGATCTGAGTCAGGCAGACGATGACCAGCACGATTATGACAGCGTAGCGTCTGACGAAGACACAGACAGCGAGCTGACCGCACATAATAACAACAACACCCAGCGCAACAACCGGGCCAAGAGCATGGACTCATCCGACCTGTCAGATGGGCCCATCACACTACAGGAGTATCTGGAGGTCAAGAAAGCACTGGCCTCCTCAGAGGCCAAAGTTCAACAGCTCATGAAGGTCAACAACAACCTGAGCGAGGAGCTGCGGAGGCTACAGAAGGAGATCACGCGGATGCAGACGGAGAACAGCGTGCTGCGGGGGGCCCAGGCTGGGGCCGGGGGCGCTCTGACCGGGGGTGGTGGCACAGGGCTGTGGACTGGTGGGGTAAGGGGTACATGTAGTGGAGGAGGGGTAGGCGGAGACTCCGGCCTAACCGCACCCTCGACCGCTCCCCTCCGCCGGGATAGACAAGCTTTCTCTATGTATGAGCCTGTGGGGACCACCCCCAAAGCTCTCACCCCAGCCCTGGACCCCCTGACGGGCCGCCTGCAGCCTCTCAGCCCCGTGCGAAAGGGCGCCCCTGCGGGTCCCACCCCCTACGGAGGGCCGCACCTGTCAGCCTCCACTGACGGACGATATAATCCTCCAAAAGCAGGAGAGAAATACGGGAGCGGTACTGATAGTGACTATGACAACTCTCAAACATACGATGTCTCTCTTGGTGTGGGCCGCAGCAGTGAGGAGGACAGCAGGGGGGATGTGGAAGACACAGAGGGTGACCCTGACCCCACGCTGCCCTGCACAGAAGACGTCATCCTCAAAACCGAGCAGGTCACCAAGAACATCCAGGAGCTCCTGAGAGCTGCACAGGAGTTTAAACACGACAGTTTTGTGCCATGCTCAGAGAAAATCCATTTAGCTGTGACGGAAATGGCCTCGCTGTTTCCTAAGAGACCAGCGCTGGATGCAGTACGTTCTTCCTTGAAGCTCCTGGGGGCCAGTGCGTCCCGTCTGCAGGTAGAGTGTCGTAAAGCGGCGCCCTCCGACTCGTCGGCCAGCACAGTGGACTACCAGCTGCTCACCCAGCAGGTCATCCAGTGCGCCTACGACATCGCCAAAGCTGCCAAGCAGCTGGTCACCATCACTACCCGTGAAAAAAAACAGTGACCCACCTGGCACACTGGGGTCCAGCGGGAAGGGGCAAAGACTGAGAAACGGGAGAGGAGGAAGACACTAAGTAAAAACTGACGGCTGGGAATCTTTGGTCAGGTTGATAGAAAAATTATGTGAGGGAACGAAGATGGGGAAAAAA

Function

symbol description
git1 Predicted to enable GTPase activator activity and metal ion binding activity. Acts upstream of or within angiogenesis. Is expressed in head. Human ortholog(s) of this gene implicated in attention deficit hyperactivity disorder. Orthologous to human GIT1 (GIT ArfGAP 1).

GO:

id name namespace
GO:0001568 blood vessel development biological_process

KEGG:

id description
K05737 GIT1; G protein-coupled receptor kinase interactor 1

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000072_04932845_04949502.mRNA True 2292 mRNA 0.57 19 4932700 4949502

Neighbor

gene id symbol gene type direction distance location
CI01000072_04818513_04830986 PRPF8, PRPF8.S coding downstream 100903 4818145 ~ 4831797 (-)
CI01000072_04810045_04816219 RILP coding downstream 116208 4809896 ~ 4816492 (-)
CI01000072_04796909_04805902 NA coding downstream 126798 4796780 ~ 4805902 (-)
CI01000072_04613981_04618187 USF1 coding downstream 314513 4613440 ~ 4618187 (-)
CI01000072_04602970_04610481 GKUP coding downstream 322219 4602849 ~ 4610481 (-)
CI01000072_04992647_05006768 SSH2A coding upstream 42716 4992218 ~ 5006768 (-)
CI01000072_05039232_05046122 SLC6A4A, SLC6A4 coding upstream 89584 5039086 ~ 5046474 (-)
CI01000072_05053749_05071797 BLMH coding upstream 104142 5053644 ~ 5071797 (-)
CI01000072_05099789_05108316 NA coding upstream 149919 5099421 ~ 5109781 (-)
CI01000072_05158807_05160357 NA coding upstream 208775 5158277 ~ 5161493 (-)
G286962 NA non-coding downstream 51062 4878140 ~ 4881638 (-)
G287129 NA non-coding downstream 91147 4840887 ~ 4841553 (-)
G286997 NA non-coding downstream 136255 4796091 ~ 4796445 (-)
G287111 NA non-coding downstream 161264 4771077 ~ 4771436 (-)
G287109 NA non-coding downstream 163862 4768631 ~ 4768838 (-)
G287154 NA non-coding upstream 73843 5023345 ~ 5023593 (-)
G287011 NA non-coding upstream 76619 5026121 ~ 5027092 (-)
G287161 NA non-coding upstream 181640 5131142 ~ 5140674 (-)
G287206 NA non-coding upstream 201222 5150724 ~ 5151489 (-)
G287210 NA non-coding upstream 212357 5161859 ~ 5162242 (-)
G287021 NA other downstream 538477 4386145 ~ 4394223 (-)
CI01000072_03972493_03983836 SPA17 other downstream 956633 3972401 ~ 3983836 (-)
G286005 NA other downstream 1933205 2993769 ~ 2999495 (-)
G285752 NA other downstream 2762042 2168048 ~ 2170658 (-)
G285766 NA other downstream 2924391 2005551 ~ 2008309 (-)
G287264 NA other upstream 431218 5380720 ~ 5382001 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_009293 git1 coding NC_007126.7 CM002899.2 28431621 ~ 28480576 (-)
bowfin (Amia calva) AMCG00005784 NA coding CM030142.1 CM030142.1 9299585 ~ 9330590 (+)