CI01000072_05039232_05046122 (SLC6A4A, SLC6A4)


Basic Information

Item Value
gene id CI01000072_05039232_05046122
gene name SLC6A4A, SLC6A4
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000072
NCBI id null
chromosome length 5473029
location 5039086 ~ 5046474 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000072_05039232_05046122.mRNA
AGAAACCTTGCAAAACAACATATGTTTTTTCTGTCAAAGATGATGTGTCACTTCTTAAGAACACTTTTTATGAGAATGACAGGGGTAAATCCATGTTAAATTCCCTTCTGCGCAATCTGAAATTCCCCTCTCTTTGTCCTGCAGCTGGGCCTGAGCAGTCTTTCCTTGCTTTCCCACCTGAGCTTGTTAAAACATACAGGTTAAGGACCAGTCACCCTCTCCTTGCTTTCTCCATCCCAGCCCGCTCTGTTCCGCACCCAGCCCCTCTTCTCCAGGCTCTCTATCCCCTCATGGGCACGATATCAGCCAGTGCAAGAGGACCACCGTCTCAACCCTAACAGCAGTCCTCACCATGGAGATGAAACAACCAATGATGATGAATCAAGAGGACGGGGGAAAGCAGGAGAAAGAACAGGAGTCGCAAGAGAATGGCAGACTGGTTGCGGACAGCGTTGGGGAGAAGGGTCAGAAATCCTGCTCCGGGCCTGGGCAGGTCTCCAACGGTTATCCCAGCACATCCCCACAAAGTCCCAGGGAAGGTGCGGGCGCTGGGATGGACAGGGGCAGCACCCCTGGAACACTCAGGACTCTGGTGGTCCAGCAGACCAGCCTGGATCCACCTAGGGAGACCTGGAGCAAAAAAATGGACTTCCTGCTGTCGGTAATCGGATATGCAGTGGACCTGGGCAACGTGTGGCGCTTTCCCTACATCTGCTACCAAAACGGAGGGGGTGCCTTTCTCCTGCCGTACCTGCTGATGGCTGTGTTTGGTGGCGTGCCTCTGTTCTACATGGAACTGGCTTTGGGCCAGTTTCACCGCAGTGGGTGTATCTCCATCTGGAAACACATTTGCCCCATCTTCAAGGGTATAGGCTTTGCCATCTGCATCATTGCACTCTACATTGCCTTCTACTACAATACCATAATGGCCTGGGCTCTCTATTACCTCCTGTCCTCCTTTCGCCCCACACTGCCCTGGACCACCTGCAACAACCGGTGGAACACTCCCAACTGCACCCGCTACCTGTCCACCGACTTGAATGTATCCTGGACCGAAAACTCCATCTCTCCCGCTGAGGAGTTCTATATACGGCAGGTGTTGCAGGTTCATCTGTCCCCTGGTCTTCATCAGCTGGGCTGGGTGAGCTGGCAGCTAGCCCTCTGTCTGTTGTTCATCTTCACTGTTGTCTACTTCAGCATCTGGAAGGGGGTCAAGACATCCGGCAAGGTAGTGTGGGTGACGGCTACTTTTCCATACCTGGTGTTGCTGATCCTGTTGATAAGAGGGGCCACCCTGCCGGGAGCATGGAGAGGAGTGATCTTCTACCTGAAACCTGATTGGAGCAAACTTCTAACAACTTCAGTTTGGCTTGATGCAGCTGCACAGATCTTCTTCTCTCTGGGTCCAGGCTTTGGTGTTCTCCTGGCCTTTGCCAGCTACAATCCCTTTCATAACAACTGCTACAAGTACACCTGGCTCACATTCATACCCTTTTCTACTCATTTTCTATTATCTGCTCCAAGATCTTTATATCTCTGTTTGATTTGCAGAGATGCATTGATCACAAGCTCAGTGAACTGTCTGACCAGTTTCCTGTCAGGCTTTGTGATCTTCACAGTGTTAGGCTACATGGCAGAGATGCGCCACCAAGGCGTGGAGACTGTAGCTAAGGATGCTGGTCCCAGTCTGCTCTTCATCATCTACGCTGAGGCTATTGCCAATATGCCAGCTGCTACGTTCTTCGCCATCATATTCTTCCTCATGATAATTATGCTGGGGCTGGATAGCACGTTTGCAGGTCTGGAAGGTGTAATTACAGCCATGTTGGACGAGTTCCCCCACCTGTTGGCCAAAAGAAGAGAATGGTTTGTGCTCGGCCTGGTGTGTGTCTGTTATTTGGGCGCCCTCTCCACTCTCACCTACGGTGGTGCGTTTGTTGTTAAACTATTTGAGGAGTATGCCACGGGCCCTGCTGTTATCACCGTAGTCTTCCTCGAAGTCATTGCTGTTTCCTGGTTCTATGGGACGACACGCTTCTGCAACGACGTGCAGCTGATGCTTGGCTTTGCCCCTGGTATTTTCTGGAGGGTCTGCTGGGTAGCCATCTGTCCCTGCTTCCTATTGTTCATTATTGGGAGTTTCCTGGCATTCCCGCCTGAGGTGAGGCTGTTTGACTACCTGTACCCTTTCTGGACCACAGTGCTCGGCTACTGCATTGGGGTATCTTCCTTCATCTGTGTGCCTTCCTACATGGTCTACTATCTGGTCACCACCAAAGGAACCTTCAAACAGCGTCTGTTAAAAAGCATTACCCCTGAGGCTTCGGGGTCCAGCGGCCCTCAGAGAGACACAATTGTCATCACCAATGCCGTGTGACACATTTCGTCCTCTGCTGGACATGTAGCACAAACGCGAAGGACCCGTGGCTCCTGTAAGGGCCCCGGCCGACCTCCCTTCACACCTCACCCCAGAGGAGTCTGCTACCTGTATTGTGTGATGGTGGGGCCAGGCCTCCGAATACA

Function

symbol description
slc6a4a Enables serotonin:sodium symporter activity. Acts upstream of or within serotonin transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in neuron projection. Predicted to be integral component of plasma membrane. Is expressed in brain; pharynx; and spinal cord. Human ortholog(s) of this gene implicated in several diseases, including alcohol use disorder; alexithymia; anxiety disorder (multiple); heart disease (multiple); and mental depression (multiple). Orthologous to human SLC6A4 (solute carrier family 6 member 4).
slc6a4 Enables serotonin:sodium symporter activity. Involved in regulation of thalamus size; response to toxic substance; and serotonin uptake. Acts upstream of or within monoamine transport. Located in endomembrane system; membrane raft; and plasma membrane. Implicated in several diseases, including alcohol use disorder; alexithymia; anxiety disorder (multiple); heart disease (multiple); and mental depression (multiple). Biomarker of brain disease; chronic fatigue syndrome; diverticulitis; and leishmaniasis.

NR:

description
serotonin transporter

GO:

id name namespace
GO:0051610 serotonin uptake biological_process

KEGG:

id description
K05037 SLC6A4, SERT; solute carrier family 6 (neurotransmitter transporter, serotonin) member 4

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000072_05039232_05046122.mRNA True 2523 mRNA 0.52 13 5039086 5046474

Neighbor

gene id symbol gene type direction distance location
CI01000072_04992647_05006768 SSH2A coding downstream 32318 4992218 ~ 5006768 (-)
CI01000072_04932845_04949502 GIT1 coding downstream 89584 4932700 ~ 4949502 (-)
CI01000072_04818513_04830986 PRPF8, PRPF8.S coding downstream 207289 4818145 ~ 4831797 (-)
CI01000072_04810045_04816219 RILP coding downstream 222594 4809896 ~ 4816492 (-)
CI01000072_04796909_04805902 NA coding downstream 233184 4796780 ~ 4805902 (-)
CI01000072_05053749_05071797 BLMH coding upstream 7170 5053644 ~ 5071797 (-)
CI01000072_05099789_05108316 NA coding upstream 52947 5099421 ~ 5109781 (-)
CI01000072_05158807_05160357 NA coding upstream 111803 5158277 ~ 5161493 (-)
CI01000072_05172707_05173819 GPR4 coding upstream 126205 5172679 ~ 5174665 (-)
CI01000072_05208841_05218652 EML2 coding upstream 162367 5208841 ~ 5218652 (-)
G287011 NA non-coding downstream 11994 5026121 ~ 5027092 (-)
G287154 NA non-coding downstream 15493 5023345 ~ 5023593 (-)
G286962 NA non-coding downstream 157448 4878140 ~ 4881638 (-)
G287129 NA non-coding downstream 197533 4840887 ~ 4841553 (-)
G286997 NA non-coding downstream 242641 4796091 ~ 4796445 (-)
G287161 NA non-coding upstream 84668 5131142 ~ 5140674 (-)
G287206 NA non-coding upstream 104250 5150724 ~ 5151489 (-)
G287210 NA non-coding upstream 115385 5161859 ~ 5162242 (-)
G287213 NA non-coding upstream 121009 5167483 ~ 5167727 (-)
G287230 NA non-coding upstream 221700 5268174 ~ 5268465 (-)
G287021 NA other downstream 644863 4386145 ~ 4394223 (-)
CI01000072_03972493_03983836 SPA17 other downstream 1063019 3972401 ~ 3983836 (-)
G286005 NA other downstream 2039591 2993769 ~ 2999495 (-)
G285752 NA other downstream 2868428 2168048 ~ 2170658 (-)
G285766 NA other downstream 3030777 2005551 ~ 2008309 (-)
G287264 NA other upstream 334246 5380720 ~ 5382001 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location