CI01000072_05158807_05160357


Basic Information

Item Value
gene id CI01000072_05158807_05160357
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000072
NCBI id null
chromosome length 5473029
location 5158277 ~ 5161493 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000072_05158807_05160357.mRNA
ACTGGAGGAGGCTTCGAGTCTTCGTGAGGAGCATCTCCAATTACAAAACGCATCTACTGTGCTCTATTGCACTGGGGAGCTTTCCCACAGTATTGAACCTGAGATGAACTTGGTAAAATAAACGCAGAAGGGTAAGAGAATACCAAGCCCATGCCTTCCAACAAAGACTGGTATTTTACTATAATAATAATAATAATAATAATAAGGTTTGGTCTAAGAAGAAATCACAAGCATCTTCATATATCAACACAAATCTGTAATTTAAACTCTAATATTTTATGTAGATAGGCTACATTTTCTTTAAATAAATAAATACTAGGTACTTACAACAAAGTCTACTGCTATTGAATATTAACACCAATATTGCCAAGGAAAAAGATCCATTTGATAGACATTGACTTTTTGTGAAACATATAACAAGGCTGTTGTCACTATACAATAGCTTATTATATTTGTCATTCAGCAAAATGTAAACCGTAAAACTATTAATTAATTAATTAATTCACAAAATGCTAAATTGCAATTTTAAAATAGGCTATAAAAACATTTTGGCCTGGTTTAACAAACAGGGCTTAGATTAAAGCCAGGATTAGGCCTTAGTTCAATTAGGACATTTAAGTAGCTTTTATAAACATGCCTTAGAAGACACATTACTGGTGTGCATCTTGAAACAAAACAATGGCACTGACATATTTTAAAATATGTCAGTGCAAGTTGCTTTCAGTTAAAACAAATGCATTTTAGTCTGGGACTAGGCTCACGCCTTGTCTGTGAATTGTAATTTTGTCATATATTACTTACATATTAATGTATACATGTGCAGCATATAAACGTGACAACTTGCCCCGACTGACATTCATGAAAAATACCTTCTAGCTAGCCTATTCCTGTCAAATTTTACAGAGTCCCATAGAAAAGCTTTATAAGTGCACCCTCTGCTGTCGCAAACGTGTATTACAAACACACGTTCTCCAAGAACTGCGACATAGAAGTCCTTCCGGGTCAAAGTTGATTCCGTTCCATCCATATGTGATTCACGTGTTTACATGGACATTTGTATTTGTAGCAAAGTATCGGTGACATTGGCATCCGAATACATTTATTTCATTCTGTTATAGTAAAAGCAGAGTGCCGATATGTCGCAAAGTGAAGCTCAGACTTCAGTAGCAAAGGAGAAAGTTTCAACGTACCAGTGTCCGGCTGATTTTATGTCCTTTTCATATGATTCCTCTGCTAATGCCTTATGGGACGGAGATGAACAGAAAGAATTATGGCTCATCAAAGCTCCAGCTAATTTTAATCCTAAAAGCTTTGAAGACCTCAAAATTCCCTTATCAGGACTGGAAATGGTCCAGTCTTGTGGCACGACACCTAAGACCTACAGCATCCTCGGTGATAGGACGGCACCATCAGACCTCCATCTGCTCGTTTCCAAAGGAAAAAAACGTAAGCCTTCTCTCTGTTCCTCTGGCTTCAGTGGTGTCCTCAAGATCTCTAAGAGCCATGAAAACTGCAATGAGAACCAAGTCCCTGTTCCCATCCCATCCACTCCTGCTCCGTGCATCCCAGCTGGTCTCAAGCAACGTTTCCAGCCTTTTGGTAGTACCGTTGCAGCTCACGTGGAAGATGAATTACATCCATCTGAACTGATGGAGGAAGAGCCAATGGAGGAGGGGAGGAGGAAGAAGAAAAAGGTTAAGAAAGAGAAGGAAAGATCGAGTGAAGACATGCTTGATGAAAGTTTAATATTCAAAACAGAGCCACTGGATTCTTCTTATGATTATAATGACACCCCAGGGAAAACTAAAAAGAAGAAAAAGAAGAGTAGTCGACATGAGTAGACTGTTAAAAGAACTTGAAATGTTCTATACATTTTGTTTGTCATGTTCACAAATGCTTACTGTGATATTTAACTGTCAAAATACAAGTAAGAAATAAGTATTTCTAACTGTGTCTGTCATAAAACAATTCAACGATTCTGTACAACACTCAGTATTACCTCAAAAGTGTTGTTTCTTCTGCTTAAAATCATTAATTTTTTTTGTTTATTTTGCTCTACTGCCATACAAAGCAAATGTACATCGCAGAGACAGACATGAAAGGGAAAATTCACCCCCAAAAAAACACAAATTCTGTCATCATTTATTCTCCATCATGTCATTCTAAACATTAGCTTTCATCTGTTGAAGATAAAATAATATATTTAAGAATGTTTCAAGTGTTTCATCCGAAAGTTGAGCCCTTGACTTTTTGATTGTATTGGCAAAAGTGTTTCAAAATATTTTCTTTTATGTTGGGTGAATTATCTATCCAAAGTGAACTGTATTAAGTGTTTTAAAGTACTACTTTTATGTTTCACAAAAAGAATAAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000072_05158807_05160357.mRNA True 2371 mRNA 0.36 4 5158277 5161493

Neighbor

gene id symbol gene type direction distance location
CI01000072_05099789_05108316 NA coding downstream 48496 5099421 ~ 5109781 (-)
CI01000072_05053749_05071797 BLMH coding downstream 86480 5053644 ~ 5071797 (-)
CI01000072_05039232_05046122 SLC6A4A, SLC6A4 coding downstream 111803 5039086 ~ 5046474 (-)
CI01000072_04992647_05006768 SSH2A coding downstream 151509 4992218 ~ 5006768 (-)
CI01000072_04932845_04949502 GIT1 coding downstream 208775 4932700 ~ 4949502 (-)
CI01000072_05172707_05173819 GPR4 coding upstream 11186 5172679 ~ 5174665 (-)
CI01000072_05208841_05218652 EML2 coding upstream 47348 5208841 ~ 5218652 (-)
CI01000072_05268621_05275350 NA coding upstream 107060 5268553 ~ 5275643 (-)
CI01000072_05277286_05281467 NA coding upstream 115548 5277041 ~ 5281696 (-)
CI01000072_05298324_05299101 DHARMA coding upstream 136718 5298211 ~ 5299126 (-)
G287206 NA non-coding downstream 6788 5150724 ~ 5151489 (-)
G287161 NA non-coding downstream 17603 5131142 ~ 5140674 (-)
G287011 NA non-coding downstream 131185 5026121 ~ 5027092 (-)
G287154 NA non-coding downstream 134684 5023345 ~ 5023593 (-)
G286962 NA non-coding downstream 276639 4878140 ~ 4881638 (-)
G287210 NA non-coding upstream 366 5161859 ~ 5162242 (-)
G287213 NA non-coding upstream 5990 5167483 ~ 5167727 (-)
G287230 NA non-coding upstream 106681 5268174 ~ 5268465 (-)
G287234 NA non-coding upstream 122593 5284086 ~ 5294759 (-)
G287273 NA non-coding upstream 182760 5344253 ~ 5344555 (-)
G287021 NA other downstream 764054 4386145 ~ 4394223 (-)
CI01000072_03972493_03983836 SPA17 other downstream 1182210 3972401 ~ 3983836 (-)
G286005 NA other downstream 2158782 2993769 ~ 2999495 (-)
G285752 NA other downstream 2987619 2168048 ~ 2170658 (-)
G285766 NA other downstream 3149968 2005551 ~ 2008309 (-)
G287264 NA other upstream 219227 5380720 ~ 5382001 (-)

Expression


Co-expression Network