CI01000072_05298324_05299101 (DHARMA)


Basic Information

Item Value
gene id CI01000072_05298324_05299101
gene name DHARMA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000072
NCBI id null
chromosome length 5473029
location 5298211 ~ 5299126 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000072_05298324_05299101.mRNA
AGCTTCTCTAGGCCCCTACTTGAACATGGCAACTCAGAAATTTTCAGACTTCTCTATTGATTACATCTTGGGAGATGCCAGCAAACAAACAGCAGAAACACCTGGAGTGGATCATCCAGCATCTTCTCAGGATTTCCAAGGGCACTTGACCAACCTGGACCTGCTCTACCAGGATAGATCTAGAGGTCACTGTGACCATGCAGCACTGGTGATGAACTTTCCAGCTTCATCATGGGCGGGAATGTACAGCTGCTGTGGTGTTCCAGTCTCATATTATCAACCACCTTTTAATTCAAATTACTATGCAGGTCAACAGTGGCCTTTTGCCGTATCAGGTTGTGAAACAGTTGAGAATCACTTCCACCAAACTGTAGCTCAGAGACAGCGCAGTCGAATCCGAACGGTTTTCACCGACAACCAGACGGAGCAGCTCGAGCGGCTCTTCGCCATCACGGATTACCCGACCGCTGAAACCCGGTCGGAGTTAGCCAAGAACACCGGCCTCAGCGAGGAGACTGTGCGGGTGTGGTTCAAGAATCGACGAGCACGCAGAAAGAGACAGACAACCTGCCCTGACAAAAACTCGAGGCGCGCTGTCGATGGTCATCAGGAATAAGATTAATTTATAATTGAAACATGTAAACACAGGCTCAATGACTTTTTTAATGTTGTTTTTCGAAAGCACACTTTTGTTTACAGTTAAAATGTACATTTTTTAATACAAATAAA

Function

symbol description
dharma Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II transcription regulatory region sequence-specific DNA binding activity. Acts upstream of or within several processes, including animal organ morphogenesis; floor plate development; and regulation of signal transduction. Predicted to be located in nucleus. Is expressed in embryonic structure.

GO:

id name namespace
GO:0043565 sequence-specific DNA binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000072_05298324_05299101.mRNA True 729 mRNA 0.46 3 5298211 5299126

Neighbor

gene id symbol gene type direction distance location
CI01000072_05277286_05281467 NA coding downstream 16515 5277041 ~ 5281696 (-)
CI01000072_05268621_05275350 NA coding downstream 22568 5268553 ~ 5275643 (-)
CI01000072_05208841_05218652 EML2 coding downstream 79559 5208841 ~ 5218652 (-)
CI01000072_05172707_05173819 GPR4 coding downstream 123546 5172679 ~ 5174665 (-)
CI01000072_05158807_05160357 NA coding downstream 136718 5158277 ~ 5161493 (-)
CI01000072_05353426_05366845 NA coding upstream 53750 5352876 ~ 5366947 (-)
CI01000072_05396600_05399519 NA coding upstream 97414 5396540 ~ 5399777 (-)
G287234 NA non-coding downstream 3452 5284086 ~ 5294759 (-)
G287230 NA non-coding downstream 29746 5268174 ~ 5268465 (-)
G287213 NA non-coding downstream 130484 5167483 ~ 5167727 (-)
G287210 NA non-coding downstream 135969 5161859 ~ 5162242 (-)
G287206 NA non-coding downstream 146722 5150724 ~ 5151489 (-)
G287273 NA non-coding upstream 45127 5344253 ~ 5344555 (-)
G287275 NA non-coding upstream 76664 5375790 ~ 5376098 (-)
G287276 NA non-coding upstream 83547 5382673 ~ 5382999 (-)
G287278 NA non-coding upstream 105069 5404195 ~ 5404619 (-)
G287279 NA non-coding upstream 105661 5404787 ~ 5404987 (-)
G287021 NA other downstream 903988 4386145 ~ 4394223 (-)
CI01000072_03972493_03983836 SPA17 other downstream 1322144 3972401 ~ 3983836 (-)
G286005 NA other downstream 2298716 2993769 ~ 2999495 (-)
G285752 NA other downstream 3127553 2168048 ~ 2170658 (-)
G285766 NA other downstream 3289902 2005551 ~ 2008309 (-)
G287264 NA other upstream 81594 5380720 ~ 5382001 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_009304 dharma coding NC_007126.7 CM002899.2 29011290 ~ 29012493 (-)