G284694


Basic Information

Item Value
gene id G284694
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000072
NCBI id null
chromosome length 5473029
location 1656852 ~ 1696292 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU322660
GCAGAACAGTCAGGGTGTTGATGGAGAGGAGATCAGTTCAAACCATCCCAGCACTGCCACTGTTATTAATAGTCTCCAAGCTGACATTCAGCCAAACAAAGGGCACGTGGAGAATAGACTGCTGATGGAGTGGATATAGAGACAGGCTGGTGTCAGTTGCCTTGGTGTTCGTGTTTGAACAAGGTTTGTGTGTGTGTGTTGCATGTTAATTCACTCCAAAGTAAAGTGATTCTCATTGTCTTTGAAGATGTCAGGAGGAGATGAAAGAGATCTCTCGTGCTCCCTCTCTCTCTTTCTATTTGCACATATCCCAACACTGACGTGCTGGCTGCAGCACTGTGTTCTTTATTGAGGGTTTTGCATAAGGGACTGTCTGCGCTCACTTTGGCCAGCAATAGAGATGCACAAAAAGAAATATTTTCAAATCTTTTTTATTTTCAATTCACTTGACCCTAATCAGACACATTTCTTAAGAGGTGTTTACTCAAGACACATTCAAAAATATGTGTGCAAACAGTGTTCATTTTTACATTGTTTTTAGTCAGTTTTTGTCTTTTGACACAAATATCCTTTACATGTAGTCAATATTTTATCAGGTCAGATTCATTAAAGGGTTAGTTCACCCAAAAATGAAAATTCTGTCATTAATTACTCACCCTCATGTTGTTCCACACCTGTAAGACCTTCGTTCATCTTCGGAACACAAATTAAGATATTTTTGATAAAATCCGATGGCTCAGTGAGGCTTTCATTGGCAGCAAGATGATTAACACTTTCAGATGCCCAGAAAGCTACTAAAGACATATTTAAAACAATTTATGTGACTACAGTGGTTCAACCTTAATGTTATGAAGCGACGAGAATACTTTTTGTGTGCCAAAAAAACAAAATAATGACTTTATTCAACAATCTCTTCTCTTCCCTGTCAGTCTCCTATGCTGCTCACGTTGTAAACACAGTGCAGTGCTTCCTGGTTCTACGTCAGAATGCCGACTCATTATTGGTCAGCTCCTGTGTCAGCATCACACGCATTCGTCGTGGTGCACATGTGTACAGCGTCGACCAATACTGTCACATAGACTATTTTAACGCTGTCTACAGGGAGGTCAGAAAGCTCTCAGATTTCATCAAAAATATCTTAATTTGTGTTCCGAAGATGAACGAAGGACTTACGGGTTTGGAACGACATGAAGGTGAGTAATTAATGACATTTTTGGGTGAACTAACCCTTTAAGTCATCCTATGGAACATTTGGAAGTTGGGGTCTGAGGACCCCTAGTTGAGAACCACTATTCTAAACTGAGATTATTTGGATGAAAATTCTCCATTCGATCTCATTTGAGATGTTAAATTTATCTCACTTGTTATTTTTCTTCCATACAGCTATTTTCCTCCGTGTATAAGGTTAAACATGGATATGGCCATATTAGCTTTTAAAAGGAGATAAACAGGCTCATTCTGCCCCCAGGAGGACTGTGTGCCCGACACCCCACTGTAGAGTTATTGATAGAATATCTTGGAGGGAATGCTGATCTTTGTATTGGCTTCAATCATACAATGAAGATCCTTCAGGCAAGAGAAGGCCTTATAACACAGAGGAATTGCTTCTTATTTGGTGCTTTTTCTCAGGGCCTCAATCACTCACTCATTCATTCAATCTAAGAAGCAAAATCTGAAACAATGCCCAGCGATGACTGAGATTCCTT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU322660 True 1706 lncRNA 0.40 2 1656852 1696292

Neighbor

gene id symbol gene type direction distance location
CI01000072_01413987_01424254 RPA1 coding upstream 232598 1413987 ~ 1424254 (+)
CI01000072_01406735_01412673 SERPINF2B coding upstream 243732 1406735 ~ 1413120 (+)
CI01000072_01391395_01404483 WDR81 coding upstream 250779 1389526 ~ 1406073 (+)
CI01000072_01351729_01362820 NA coding upstream 293813 1350472 ~ 1363039 (+)
CI01000072_01334982_01348258 NA coding upstream 308594 1334982 ~ 1348258 (+)
CI01000072_01724644_01730223 NA coding downstream 28160 1724452 ~ 1731160 (+)
CI01000072_01762899_01783522 DPH1 coding downstream 66275 1762567 ~ 1783960 (+)
CI01000072_01864149_01879788 NA coding downstream 167619 1863911 ~ 1880204 (+)
CI01000072_02000581_02009243 TAOK1, TAOK1A coding downstream 303348 1999640 ~ 2009426 (+)
CI01000072_02016536_02023336 NA coding downstream 320130 2016422 ~ 2023361 (+)
G284696 NA non-coding upstream 66343 1587151 ~ 1590509 (+)
G284559 NA non-coding upstream 214064 1381743 ~ 1442788 (+)
G284550 NA non-coding upstream 323137 1333476 ~ 1333715 (+)
G284464 NA non-coding upstream 587694 1068520 ~ 1069158 (+)
CI01000072_00873737_00876816 NA non-coding upstream 782456 873737 ~ 876902 (+)
G284851 NA non-coding downstream 135376 1831668 ~ 1831971 (+)
G284859 NA non-coding downstream 184298 1880590 ~ 1880807 (+)
G284867 NA non-coding downstream 212844 1909136 ~ 1909363 (+)
G284869 NA non-coding downstream 214720 1911012 ~ 1911361 (+)
G284871 NA non-coding downstream 217703 1913995 ~ 1914302 (+)
CI01000072_00338411_00351144 NA other upstream 1305564 337071 ~ 351288 (+)
G284742 NA other downstream 285238 1981530 ~ 1985140 (+)
G285428 NA other downstream 2273965 3970257 ~ 3976214 (+)
G286470 NA other downstream 2472812 4169104 ~ 4175651 (+)
CI01000072_04225105_04268007 SIK2B, SIK2 other downstream 2528546 4224789 ~ 4268148 (+)
CI01000072_04338747_04342064 SDHD other downstream 2642427 4338719 ~ 4343266 (+)

Expression


Co-expression Network