G284784


Basic Information

Item Value
gene id G284784
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000072
NCBI id null
chromosome length 5473029
location 2497932 ~ 2528331 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU322758
AAAAAAAAAAAAAAAAAAAGAAAAATGTTGTACCAGGACGACAAAAAAAAAAAAACTCCAAGAAATCTTAAGTTCTGACCATTCAAAAATCATATTTGAAGTTTGTTTCATGAGTGGTATATTTTATTTCAATTTAAGGGCTAATAAAACAATAATATTAAAAATCAAACAAAGGGAGAGAAAACTGGAGGCATCAAGCTGTTGAGTGCCACTCATAAGGTTGGGCTTGGTGGCTCCCTTTGTGAGTGGGGTCTGGGGAAGGGGAGGGGGAGTGGGGTGGAGTCTCATATTGGCTGTGTTGTCTCATTGGTTTTCATCCTCCACATCTTGCAGCGCCTCTTTATTCTGTTCCTCACCTGTGCACAGAGAAACAAAGCC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU322758 True 378 lncRNA 0.39 2 2497932 2528331

Neighbor

gene id symbol gene type direction distance location
CI01000072_02460431_02474361 TUSC5A coding upstream 23528 2459743 ~ 2474404 (+)
CI01000072_02452424_02456657 NA coding upstream 41121 2451692 ~ 2456811 (+)
CI01000072_02432156_02442588 NA coding upstream 55115 2432088 ~ 2442817 (+)
CI01000072_02422050_02429020 NA coding upstream 68501 2418451 ~ 2429431 (+)
CI01000072_02390649_02398813 ABHD15 coding upstream 98708 2389181 ~ 2399224 (+)
CI01000072_02569674_02570734 TMEM199 coding downstream 40754 2569085 ~ 2571972 (+)
CI01000072_02624054_02627217 GEMIN4 coding downstream 95723 2624054 ~ 2627293 (+)
CI01000072_02880628_02899254 PIPOX coding downstream 352297 2880628 ~ 2899292 (+)
CI01000072_03035128_03046287 APPBP2, APPBP2.S coding downstream 506797 3035128 ~ 3046547 (+)
CI01000072_03066306_03101316 USP32 coding downstream 537975 3066306 ~ 3101333 (+)
G284943 NA non-coding upstream 22764 2474932 ~ 2475168 (+)
G284936 NA non-coding upstream 39527 2458024 ~ 2458405 (+)
G284929 NA non-coding upstream 82422 2415300 ~ 2415510 (+)
G284740 NA non-coding downstream 1122 2529453 ~ 2530167 (+)
G284729 NA non-coding downstream 2073 2530404 ~ 2532936 (+)
G284966 NA non-coding downstream 10184 2538515 ~ 2538721 (+)
G284994 NA non-coding downstream 85619 2613950 ~ 2614376 (+)
G284996 NA non-coding downstream 86723 2615054 ~ 2615256 (+)
G284742 NA other upstream 512792 1981530 ~ 1985140 (+)
CI01000072_00338411_00351144 NA other upstream 2146644 337071 ~ 351288 (+)
G285428 NA other downstream 1441926 3970257 ~ 3976214 (+)
G286470 NA other downstream 1640773 4169104 ~ 4175651 (+)
CI01000072_04225105_04268007 SIK2B, SIK2 other downstream 1696507 4224789 ~ 4268148 (+)
CI01000072_04338747_04342064 SDHD other downstream 1810388 4338719 ~ 4343266 (+)
CI01000072_04757636_04762507 NA other downstream 2231980 4757583 ~ 4762510 (+)

Expression


Co-expression Network