Gene
RNA
| Item | Value |
|---|---|
| gene id | G286236 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000072 |
| NCBI id | null |
| chromosome length | 5473029 |
| location | 3501101 ~ 3502215 (-) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU324425 | True | 1082 | lncRNA | 0.49 | 2 | 3501101 | 3502215 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000072_03455112_03462887 | CBL | coding | downstream | 38214 | 3454671 ~ 3462887 (-) |
| CI01000072_03396929_03398233 | RNF26 | coding | downstream | 102082 | 3396647 ~ 3399019 (-) |
| CI01000072_03379532_03381460 | NA | coding | downstream | 118559 | 3379323 ~ 3382542 (-) |
| CI01000072_03330998_03335358 | NA | coding | downstream | 165743 | 3330817 ~ 3335358 (-) |
| CI01000072_03270542_03289988 | NA | coding | downstream | 210911 | 3270479 ~ 3290190 (-) |
| CI01000072_03788767_03792874 | NA | coding | upstream | 285955 | 3788170 ~ 3793728 (-) |
| CI01000072_03844170_03870555 | ARHGEF12A | coding | upstream | 341277 | 3843492 ~ 3870555 (-) |
| CI01000072_03898250_03900844 | TMEM136A, TMEM136 | coding | upstream | 395950 | 3898165 ~ 3900844 (-) |
| CI01000072_03908090_03922942 | NA | coding | upstream | 405172 | 3907387 ~ 3922942 (-) |
| CI01000072_03941680_03952617 | PDE9A, PDE9AL | coding | upstream | 439116 | 3941331 ~ 3952617 (-) |
| G286249 | NA | non-coding | downstream | 28050 | 3393763 ~ 3473051 (-) |
| G286219 | NA | non-coding | downstream | 64902 | 3410662 ~ 3436199 (-) |
| G286290 | NA | non-coding | downstream | 109723 | 3391163 ~ 3391378 (-) |
| G286289 | NA | non-coding | downstream | 109951 | 3390707 ~ 3391150 (-) |
| G286285 | NA | non-coding | downstream | 117066 | 3383823 ~ 3384035 (-) |
| G286256 | NA | non-coding | upstream | 339455 | 3841670 ~ 3842062 (-) |
| CI01000072_03972493_03983836 | SPA17 | non-coding | upstream | 467913 | 3972401 ~ 3983836 (-) |
| G286867 | NA | non-coding | upstream | 550836 | 4053051 ~ 4065995 (-) |
| G286873 | NA | non-coding | upstream | 564721 | 4066936 ~ 4067174 (-) |
| G286874 | NA | non-coding | upstream | 565378 | 4067593 ~ 4067795 (-) |
| G286005 | NA | other | downstream | 501606 | 2993769 ~ 2999495 (-) |
| G285752 | NA | other | downstream | 1330443 | 2168048 ~ 2170658 (-) |
| G285766 | NA | other | downstream | 1492792 | 2005551 ~ 2008309 (-) |
| CI01000072_01596829_01610605 | NA | other | downstream | 1873206 | 1594111 ~ 1627895 (-) |
| G285534 | NA | other | downstream | 2146169 | 1335507 ~ 1354932 (-) |
| G287021 | NA | other | upstream | 883930 | 4386145 ~ 4394223 (-) |
| G287264 | NA | other | upstream | 1878505 | 5380720 ~ 5382001 (-) |
