Gene
RNA
| Item | Value |
|---|---|
| gene id | G285428 |
| gene name | NA |
| gene type | unknown |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000072 |
| NCBI id | null |
| chromosome length | 5473029 |
| location | 3970257 ~ 3976214 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU323494 | True | 1275 | TUCP | 0.41 | 3 | 3970257 | 3976214 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000072_03903428_03906320 | NA | coding | upstream | 63813 | 3903428 ~ 3906444 (+) |
| CI01000072_03895667_03895928 | NA | coding | upstream | 73869 | 3895667 ~ 3896388 (+) |
| CI01000072_03882241_03882531 | NA | coding | upstream | 86702 | 3881234 ~ 3883555 (+) |
| CI01000072_03487938_03491881 | CCDC153 | coding | upstream | 477185 | 3487702 ~ 3493072 (+) |
| CI01000072_03433597_03448384 | MCAM | coding | upstream | 520876 | 3433597 ~ 3449381 (+) |
| CI01000072_03987009_04043360 | NA | coding | downstream | 10592 | 3986806 ~ 4044255 (+) |
| CI01000072_04057264_04059507 | NA | coding | downstream | 81050 | 4057264 ~ 4061351 (+) |
| CI01000072_04095246_04107965 | DRD2A, DRD2 | coding | downstream | 119032 | 4095246 ~ 4108670 (+) |
| CI01000072_04203719_04206013 | NA | coding | downstream | 227505 | 4203719 ~ 4206267 (+) |
| CI01000072_04218108_04222857 | LAYN, LAYNB | coding | downstream | 241894 | 4218108 ~ 4223278 (+) |
| G285413 | NA | non-coding | upstream | 5985 | 3956943 ~ 3964272 (+) |
| G285368 | NA | non-coding | upstream | 106086 | 3861578 ~ 3864171 (+) |
| G285296 | NA | non-coding | upstream | 239070 | 3662960 ~ 3731187 (+) |
| G285285 | NA | non-coding | upstream | 460373 | 3508030 ~ 3509884 (+) |
| G286442 | NA | non-coding | downstream | 141246 | 4117460 ~ 4117824 (+) |
| G286445 | NA | non-coding | downstream | 152962 | 4129176 ~ 4131231 (+) |
| G286449 | NA | non-coding | downstream | 161434 | 4137648 ~ 4137947 (+) |
| G286451 | NA | non-coding | downstream | 165070 | 4141284 ~ 4141484 (+) |
| G286457 | NA | non-coding | downstream | 172579 | 4148793 ~ 4149006 (+) |
| G284742 | NA | other | upstream | 1985117 | 1981530 ~ 1985140 (+) |
| CI01000072_00338411_00351144 | NA | other | upstream | 3618969 | 337071 ~ 351288 (+) |
| G286470 | NA | other | downstream | 192890 | 4169104 ~ 4175651 (+) |
| CI01000072_04225105_04268007 | SIK2B, SIK2 | other | downstream | 248624 | 4224789 ~ 4268148 (+) |
| CI01000072_04338747_04342064 | SDHD | other | downstream | 362505 | 4338719 ~ 4343266 (+) |
| CI01000072_04757636_04762507 | NA | other | downstream | 784097 | 4757583 ~ 4762510 (+) |
| G286564 | NA | other | downstream | 826239 | 4802453 ~ 4802948 (+) |
