Gene
RNA
| Item | Value |
|---|---|
| gene id | G286471 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000072 |
| NCBI id | null |
| chromosome length | 5473029 |
| location | 4177979 ~ 4179842 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU324693 | True | 1213 | lncRNA | 0.45 | 6 | 4177979 | 4179842 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000072_04095246_04107965 | DRD2A, DRD2 | coding | upstream | 69309 | 4095246 ~ 4108670 (+) |
| CI01000072_04057264_04059507 | NA | coding | upstream | 116628 | 4057264 ~ 4061351 (+) |
| CI01000072_03987009_04043360 | NA | coding | upstream | 133724 | 3986806 ~ 4044255 (+) |
| CI01000072_03903428_03906320 | NA | coding | upstream | 271535 | 3903428 ~ 3906444 (+) |
| CI01000072_03895667_03895928 | NA | coding | upstream | 281591 | 3895667 ~ 3896388 (+) |
| CI01000072_04203719_04206013 | NA | coding | downstream | 23877 | 4203719 ~ 4206267 (+) |
| CI01000072_04218108_04222857 | LAYN, LAYNB | coding | downstream | 38266 | 4218108 ~ 4223278 (+) |
| CI01000072_04225105_04268007 | SIK2B, SIK2 | coding | downstream | 44947 | 4224789 ~ 4268148 (+) |
| CI01000072_04329947_04337502 | NA | coding | downstream | 149665 | 4329507 ~ 4338038 (+) |
| CI01000072_04338747_04342064 | SDHD | coding | downstream | 158905 | 4338719 ~ 4343266 (+) |
| G286469 | NA | non-coding | upstream | 10096 | 4167506 ~ 4167883 (+) |
| G286459 | NA | non-coding | upstream | 28144 | 4149569 ~ 4149835 (+) |
| G286458 | NA | non-coding | upstream | 28747 | 4149028 ~ 4149232 (+) |
| G286457 | NA | non-coding | upstream | 28973 | 4148793 ~ 4149006 (+) |
| G286451 | NA | non-coding | upstream | 36495 | 4141284 ~ 4141484 (+) |
| G286477 | NA | non-coding | downstream | 89172 | 4269014 ~ 4275631 (+) |
| G286505 | NA | non-coding | downstream | 100756 | 4280598 ~ 4280835 (+) |
| G286513 | NA | non-coding | downstream | 143381 | 4323223 ~ 4323835 (+) |
| G286514 | NA | non-coding | downstream | 145686 | 4325528 ~ 4325764 (+) |
| G286470 | NA | other | upstream | 2328 | 4169104 ~ 4175651 (+) |
| G285428 | NA | other | upstream | 201765 | 3970257 ~ 3976214 (+) |
| G284742 | NA | other | upstream | 2192839 | 1981530 ~ 1985140 (+) |
| CI01000072_00338411_00351144 | NA | other | upstream | 3826691 | 337071 ~ 351288 (+) |
| CI01000072_04757636_04762507 | NA | other | downstream | 580469 | 4757583 ~ 4762510 (+) |
| G286564 | NA | other | downstream | 622611 | 4802453 ~ 4802948 (+) |
| CI01000072_04831647_04834194 | NA | other | downstream | 649556 | 4831557 ~ 4834707 (+) |
