Gene
RNA
| Item | Value |
|---|---|
| gene id | G286940 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000072 |
| NCBI id | null |
| chromosome length | 5473029 |
| location | 4305299 ~ 4305518 (-) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU325278 | True | 220 | lncRNA | 0.49 | 1 | 4305299 | 4305518 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000072_04284927_04303593 | PPP2R1A, PPP2R1B, PDGFB, PPP2R1B.S | coding | downstream | 1706 | 4284426 ~ 4303593 (-) |
| CI01000072_04207000_04210775 | NA | coding | downstream | 94221 | 4206961 ~ 4211078 (-) |
| CI01000072_04197826_04201434 | NA | coding | downstream | 103865 | 4197826 ~ 4201434 (-) |
| CI01000072_04191370_04195085 | NA | coding | downstream | 110214 | 4191370 ~ 4195085 (-) |
| CI01000072_04156907_04167270 | NA | coding | downstream | 138029 | 4156907 ~ 4167270 (-) |
| CI01000072_04315603_04316880 | NA | coding | upstream | 9393 | 4314911 ~ 4316880 (-) |
| CI01000072_04514012_04539785 | NA | coding | upstream | 207260 | 4512778 ~ 4539876 (-) |
| CI01000072_04577347_04600719 | UBASH3BB | coding | upstream | 271531 | 4577049 ~ 4600719 (-) |
| CI01000072_04602970_04610481 | GKUP | coding | upstream | 297331 | 4602849 ~ 4610481 (-) |
| CI01000072_04613981_04618187 | USF1 | coding | upstream | 307922 | 4613440 ~ 4618187 (-) |
| G286937 | NA | non-coding | downstream | 28037 | 4277003 ~ 4277262 (-) |
| G286936 | NA | non-coding | downstream | 28430 | 4276560 ~ 4276869 (-) |
| G286883 | NA | non-coding | downstream | 35285 | 4269022 ~ 4270014 (-) |
| G286880 | NA | non-coding | downstream | 211974 | 4093110 ~ 4093325 (-) |
| G286877 | NA | non-coding | downstream | 224086 | 4080982 ~ 4081213 (-) |
| G286945 | NA | non-coding | upstream | 4160 | 4309678 ~ 4309912 (-) |
| G286948 | NA | non-coding | upstream | 14038 | 4319556 ~ 4319768 (-) |
| G286953 | NA | non-coding | upstream | 26366 | 4331884 ~ 4338077 (-) |
| G287023 | NA | non-coding | upstream | 108019 | 4413537 ~ 4414351 (-) |
| G287059 | NA | non-coding | upstream | 114679 | 4420197 ~ 4420415 (-) |
| CI01000072_03972493_03983836 | SPA17 | other | downstream | 329232 | 3972401 ~ 3983836 (-) |
| G286005 | NA | other | downstream | 1305804 | 2993769 ~ 2999495 (-) |
| G285752 | NA | other | downstream | 2134641 | 2168048 ~ 2170658 (-) |
| G285766 | NA | other | downstream | 2296990 | 2005551 ~ 2008309 (-) |
| CI01000072_01596829_01610605 | NA | other | downstream | 2677404 | 1594111 ~ 1627895 (-) |
| G287021 | NA | other | upstream | 80627 | 4386145 ~ 4394223 (-) |
| G287264 | NA | other | upstream | 1075202 | 5380720 ~ 5382001 (-) |
