Gene
RNA
| Item | Value |
|---|---|
| gene id | G287109 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000072 |
| NCBI id | null |
| chromosome length | 5473029 |
| location | 4768631 ~ 4768838 (-) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU325472 | True | 208 | lncRNA | 0.49 | 1 | 4768631 | 4768838 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000072_04613981_04618187 | USF1 | coding | downstream | 150444 | 4613440 ~ 4618187 (-) |
| CI01000072_04602970_04610481 | GKUP | coding | downstream | 158150 | 4602849 ~ 4610481 (-) |
| CI01000072_04577347_04600719 | UBASH3BB | coding | downstream | 167912 | 4577049 ~ 4600719 (-) |
| CI01000072_04514012_04539785 | NA | coding | downstream | 228755 | 4512778 ~ 4539876 (-) |
| CI01000072_04315603_04316880 | NA | coding | downstream | 451751 | 4314911 ~ 4316880 (-) |
| CI01000072_04796909_04805902 | NA | coding | upstream | 27942 | 4796780 ~ 4805902 (-) |
| CI01000072_04810045_04816219 | RILP | coding | upstream | 41058 | 4809896 ~ 4816492 (-) |
| CI01000072_04818513_04830986 | PRPF8, PRPF8.S | coding | upstream | 49307 | 4818145 ~ 4831797 (-) |
| CI01000072_04932845_04949502 | GIT1 | coding | upstream | 163862 | 4932700 ~ 4949502 (-) |
| CI01000072_04992647_05006768 | SSH2A | coding | upstream | 223380 | 4992218 ~ 5006768 (-) |
| G287108 | NA | non-coding | downstream | 781 | 4767182 ~ 4767850 (-) |
| G286974 | NA | non-coding | downstream | 7284 | 4760801 ~ 4761347 (-) |
| G286985 | NA | non-coding | downstream | 14494 | 4753844 ~ 4754137 (-) |
| G287101 | NA | non-coding | downstream | 26764 | 4737742 ~ 4741867 (-) |
| G286977 | NA | non-coding | downstream | 68645 | 4694730 ~ 4699986 (-) |
| G287111 | NA | non-coding | upstream | 2239 | 4771077 ~ 4771436 (-) |
| G286997 | NA | non-coding | upstream | 27253 | 4796091 ~ 4796445 (-) |
| G287129 | NA | non-coding | upstream | 72049 | 4840887 ~ 4841553 (-) |
| G286962 | NA | non-coding | upstream | 109302 | 4878140 ~ 4881638 (-) |
| G287154 | NA | non-coding | upstream | 254507 | 5023345 ~ 5023593 (-) |
| G287021 | NA | other | downstream | 374408 | 4386145 ~ 4394223 (-) |
| CI01000072_03972493_03983836 | SPA17 | other | downstream | 792564 | 3972401 ~ 3983836 (-) |
| G286005 | NA | other | downstream | 1769136 | 2993769 ~ 2999495 (-) |
| G285752 | NA | other | downstream | 2597973 | 2168048 ~ 2170658 (-) |
| G285766 | NA | other | downstream | 2760322 | 2005551 ~ 2008309 (-) |
| G287264 | NA | other | upstream | 611882 | 5380720 ~ 5382001 (-) |
