G287011


Basic Information

Item Value
gene id G287011
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000072
NCBI id null
chromosome length 5473029
location 5026121 ~ 5027092 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU325371
GGACAAGAGTTTCCCTGAATCCATCGAAGTGGGTCGTGAAATTTCCTGCAAGATCATGGACCGACTTGCGAGTGTAATTGGACAACAACATACAGGTCTGACGGTGGGATTGAGTTTGATGATCATCGTTGTGATTATCGTCCTCGCGGCTGTTGTTTACACTCCACCCGGCGCCACAGCGCGCTGCTTGAGAAGAAACAGGAGTGAAGAAATCCTCTCCCTGACTGCTAACAGAATTTCATGACTGCTAACAGAAAAAATATGAACTTTATGGATCTTTGTGTTGGACTCACAACATAGAATAAACTGTTAAACCATTAATAGGGGGACTGTGAACACTGTTTACCCCTTTAAATAGTGGTTTATTAAAGGATTAGTTCACTTTCAAATGAAAATTACCCCAAGCTTTACTCACCCTCAAGCCATCCTAGGTGTATATGACTTTCTTCTTTCTGATGAACACAATCGTAGAAATATTAATAAATATCCTGACTCATCCGAGCTTTATGCGTTACCAAACGAGTATGAACTGAAGAAAGTGTCTCCATCCATCATAAACATATTCCACACGGCTCTGGAGGGTTAATAAAGGCCTTCTGAAGCGAAGCGATGCGTTTGTGTAAAAAAAAAATCCATATTTAACAAGTTATAAAGTAAAATATGTAGCTTCTGCCAGACCGCCTTCCGTATTCTTCAAAAAAAGCTTACGCTGTATGTCCTACGCCTTCCCTATTCAA

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU325371 True 737 lncRNA 0.41 2 5026121 5027092

Neighbor

gene id symbol gene type direction distance location
CI01000072_04992647_05006768 SSH2A coding downstream 19353 4992218 ~ 5006768 (-)
CI01000072_04932845_04949502 GIT1 coding downstream 76619 4932700 ~ 4949502 (-)
CI01000072_04818513_04830986 PRPF8, PRPF8.S coding downstream 194324 4818145 ~ 4831797 (-)
CI01000072_04810045_04816219 RILP coding downstream 209629 4809896 ~ 4816492 (-)
CI01000072_04796909_04805902 NA coding downstream 220219 4796780 ~ 4805902 (-)
CI01000072_05039232_05046122 SLC6A4A, SLC6A4 coding upstream 11994 5039086 ~ 5046474 (-)
CI01000072_05053749_05071797 BLMH coding upstream 26552 5053644 ~ 5071797 (-)
CI01000072_05099789_05108316 NA coding upstream 72329 5099421 ~ 5109781 (-)
CI01000072_05158807_05160357 NA coding upstream 131185 5158277 ~ 5161493 (-)
CI01000072_05172707_05173819 GPR4 coding upstream 145587 5172679 ~ 5174665 (-)
G287154 NA non-coding downstream 2528 5023345 ~ 5023593 (-)
G286962 NA non-coding downstream 144483 4878140 ~ 4881638 (-)
G287129 NA non-coding downstream 184568 4840887 ~ 4841553 (-)
G286997 NA non-coding downstream 229676 4796091 ~ 4796445 (-)
G287111 NA non-coding downstream 254685 4771077 ~ 4771436 (-)
G287161 NA non-coding upstream 104050 5131142 ~ 5140674 (-)
G287206 NA non-coding upstream 123632 5150724 ~ 5151489 (-)
G287210 NA non-coding upstream 134767 5161859 ~ 5162242 (-)
G287213 NA non-coding upstream 140391 5167483 ~ 5167727 (-)
G287230 NA non-coding upstream 241082 5268174 ~ 5268465 (-)
G287021 NA other downstream 631898 4386145 ~ 4394223 (-)
CI01000072_03972493_03983836 SPA17 other downstream 1050054 3972401 ~ 3983836 (-)
G286005 NA other downstream 2026626 2993769 ~ 2999495 (-)
G285752 NA other downstream 2855463 2168048 ~ 2170658 (-)
G285766 NA other downstream 3017812 2005551 ~ 2008309 (-)
G287264 NA other upstream 353628 5380720 ~ 5382001 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_009296 NA non-coding NC_007126.7 CM002899.2 28594543 ~ 28596509 (-)