G287161


Basic Information

Item Value
gene id G287161
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000072
NCBI id null
chromosome length 5473029
location 5131142 ~ 5140674 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU325529
TACAGTCGGTGTTGTAAGCGGCCCTTCAAACTCTACCCACGTGTCCCTGATAACTTCCAGTACATCCTTTATTTCACTGTCACCATATACAAATATGAATAAATTCTATACATTAACGCAATTTTTTCTTTTCTTTTCGGACCACAGTCCGGTACCTTTCTCCAAGATATGTGAGATGAACACTGACATCAATGTAGTTTATTATTAGCAACTAAACGTAGCTCTAACTTTACACTGTACCAGCCATTCTGACATTTAAAAAAATGTAAGTCATTGCAAAAAAGAGGAACATGCAATGTTTCCAAAATGCCTCAGTTAACACATAACTCCATATCACATAGAAATGATCAATTAAAATGAAGTCACTTCGAATAATTATTAAAGAATTGTCTTTGAACTCCTACACATTCTTTCAACAGCGTTGGTCTCGTTAAGGTTGTAAACATTACAGCATTTTGCTTGCTCCTTTAATTGGGTGCATATCATTCTGTTGTTGTTGTTGTTGTTTTGTTTTCTTGAAGAAGACTTGATAAGCAATCATACATGGTAAATTGTCTTTGGGCTCCTTAAAAAGCTTGAGGGAGAGCTGGGTTGCGGTTCTGTGAGATCACAGAGTAAGGTAGATTACGTAAACACCCTGAGAGTCACTTGTCTGTATTTTTTTTTCTTTTTCTCATTTTTTAAATTATTATTATTTTAATAACTTGGGCCTGGCCCCGGCAGCCGGTAAGGGATGGTGGCGGATCATGAGTGGAGGGTGAGTTGACTGGCAACCGCCTCCTTTGCAGGCATGAGAACAGAGTTAATGTGGGTCTGGTCGAGTAGTATGTTATCGATGGAGAACATCACATGGCGTGGGAGGTGCGTGGCGAGGGAATGGCTCGTAAGAGGGGGAGGGAAAAGGTAGTGGTGGAAAGTGGTTGGCAAACGGAGGAAGGGGAGTTATGGACGATCAAAATCAACTAGGCTTACATGATGGGATTCAGCTATAACATCAGCAGGTTCCATTGGTAAATGGAAACCCAACAGGTTTTAGCTTTAGGTGGACAGAAGACATAACACCCACCCGGCCAAGCCTCTCGCAAGCAGTCGCATTCGTTCGTTCGCTCACTCACTCGCTCGCATCACTCACGCAGCATGGCCCCTCCCCCAAGACCGAGCACATGGTTTCAGGCACGAACTTGCAATGTGTTATTTGATGAAACTGAGTGTAGTGGGAGGTGAAGAATAAGACAACAGAAGACAGGTGATGGTAAAATGAACATTTATAATGACTGCTGTTGCTGTCGGAAAATAATAACCCTTAAATAAAAAAGAAAAGAGAAAAAGAAAAGGAACGACTTAATAGATATTAGCACTAAATTGCTGACTTCACTGGTAATCCACAAGTCAAGAAACACAACTCACTATTTTTTGTACAAACACAATGCTACAGTTACATTAAATATTTAATACTTTTTTTAAGTCAGTTAATGGATGATGTTAAAAACACTAAAATACTAAAAACAAAACAGTAATTCATCTTTCCAGTCATTCCCTTTTGTCTAGTTTCTTGATGCCATTTATTAATAATGTATAGTAGTTTGAAAATAAATAAGCTCATGAAGGGTTATCAGAAAACAAAGCTGGCAGCATAGAAACATTAGATGTGGAGCTCAAGCATGGTTGAGACGCATGAAAATGATCGTTCGGCATCACAGAGAAACATTTTCGTCTTGGAACAGATGCTGCAATGGTCAAGACACCTAATCAACACGTATCACAATTTACACTCGACACGTCTGATATGTACAATGAGATTAGCAACTACCATCAGTTCAAGCTAACCTTAGTCTAGTTTAGCGGTTAGTGGTGATTCTGCATTATTTGGAGGGGCACTGCGTATATGTGGCTCTAAAACCATCTTCAACAGTACTAAATCAATTTCTTGACGCTCTTCTAAAAAGGAGCCGCTTTAGTTTAACTTCACATCGCACTCCACAAAAGCGATTTTATGCTGCCAGCCCCATTACGATGAACACGTTTCTGGTTACAGTTCAACCAAATCTGACAGATATTTACAATGAGAGAAAATAATGAAATCGTGGAGGAAACAGTTTGGATCTTACTTATGTTTGTGTACGTGTGTCTTTTTTATTATTATAATTTTTTTCGTCCCCAATGATGACTTAAAAAAAAAAAAGAAAAAAAAAAAGGAAAAATAAATCCAATCATCTCAACTAGAATTGCACAGTCTCAAAAAGGTTTGGAGATGGAATGGAGATTTTAAGTCCAAACATTTGATGAACATAGAAGGGGAGGAAGAAGGTCAATAAAGTTCATGAGGGGTGAGAAGTTCAAAGTTCAGAAGACAGAAGATGGCTGCACGGCTGAGGTTTACACACTCCTCAGCTTTTTTGAGCATGTTTTTATGTTAAAGGAACAAAAAGAAACCTGCCATTAAAATGGATTTTTTTTTCTTTGCTTGCGCTTAATGTTTTCCATCGAGAAAATCAAATGGAGAGACTTGGGGGTGAGGAGAGTGACAGTGCCCCCAACATTATGGCACACAATCAGTGATGTCCTGGAGGTTGAAGAGATGACAGAGAATTAGGAAAAGCAGTTTATGAGAGGTAGCCAGCCGTGTTTTTACCGTGTTAATCCAGGTCTTGCTTTTACTGCTCGCTTTTTGGGTAATGTTGAGGCGTCATGACTGACATCATGTTATGGAGAAACATGCTGGCTTCATGGGTGCGTCCAATGGATGTCCAACATACAAGAGAACTCAAAAAGTTTGGAATGGTACTGTTTTTGTTTGGCACTCAGGAGAAAGTCTGGGAGGGTGTGAGGGGGAGCAGTGAAAGTGCAAAAGGGAGAAAAAGGGAGAGTAAACAGGATACATATGAATGACATTTTTGTTATACTTGGTCTAGGTTAGAGAGTGTCGTACAAATAAAAACAGGAAAATAAAAAAGAGAACAGAACAGTGATATGACAAATGTATTCTAACATTGCTGGTGCTTCAATGGGTACGAGCTCAAAAGTGACCCCGGGTTGTCGTCTTCTGATGGCGTGGGGGGTGGAGGGCCGGGGGGTGGGGTTGGACTTGGGGGGCGTGTGGGGTTTGGGAAGAGCGACGAGCTCTAGCCATGCGCCCACATAAAAGCAATGACCTTCTCGACATCAGCTAAACCATAAGTTTGCATTCATCTCGACTTGACCGCGTATGACAATCCCAGCGACCTGGGAGAGAAACGTGGGCGCGAAACTGCTAAACGCATGCACAAAAACACAACTGTGCACAGAAGCGTAGCTTAAAAAGCAACCATGACTAAGCACAGTGCAATTTTGATGGCCTTAAAGAGAAAGAGAGTGGAAAAAACAAAAACAATAGTCATGATATATCAGACATGCCCTTTTTGGCACTTATTATCATTAATATTAATAATAAAAAACACTGTCAAAATAACAACATTTCCAATTTCTGTAAAAACTATTCTGTCGTTTTTTTTTGGTCAGCTTCAAATATCTGGCCAATCCTTTCTCATGCAAACAGTAGTGCCGCATCATTGCATTGTGACGTCATTGGAAAGTCCCGTCCCCTTTCCTTTATTCGTGGAGATCTGAGGTAAAGGATTCAAGCAGTTTAGCGGTGTCATTGCATTTGCTTTCGTTCGGAAACAGGGCTGTTCTTATCTGGGGTGGCGTGAAGCGTAAGAGAATTATAAAGTGCATATTCTCGTGATAATGGGTCAAGCTTTATGTGCAGTGATGGCAGAACAAGCTAAAGAACAGAAGCCTAATGATGTTGTTAGTACTGACACAGCAAACACAAGCCCTAAAATCATGATCGAAAGAGTGATATGCAAACTTATGTAGTGGTGAATACATTCACGACCATGTTTGAATGTTAATGTCGCTAAATTAACCCTCCTTTTCCAACTTTTCTCATTGTTTTTCTTATAAATTATCACAAAACATTGATAAGTCTGTACAAAATGAGTGCTCTTATTATGACGCTGGATATGACCATGGCTATGAATGATTTTGGTTTCTGTGGCCTAGTTTTCACACAGGACAACAAAACTCCAGCTTGGTCTTAGCAAAACTAAAAAAGAATAAGTTAAAAATGTGAAAAAGCTAATTTAATAGCTCGAACTGTTGTTGCCATGCAAAGATTTGTCCTCAAAATGAATGCACATTGCCTAATTGTTTTTTTTGTATGATTTTTTTGTCTTCACTTTTTTTTTTTAAATCCACGCTTCACTTGGTATCATGCAAATATCAACGTGCAAAAAAGATAACATCTATCTTCACAAAATACATTTTCAGAACTATAAAAGGCTGACTTAAGAATGCTGATAACTTATAAAACTTTAACCATGCTAAGCTAACTCGGCAGTCTTCTAGCCCCGGGGATGCGTGTTAATGGCCACATGGCACCCTGCTTTTGTTTGGCCTATGAGATGAATCCATCCCTTCTTTTTAACAAGGACTAGTTAGTTTAAGGGGCAGAAAACTCTCAACCTTATAGTGCTAATGTCTATTTTTTGCTTCTCTAGTCACTTTACCTCCACTAGTTATATCTTAACTGTGGCTTGTTTGGCACTTTTCACATTTTTTTTCTTTTTTTAAATTACAAAAGTACGTCTGCTCTTAACTAATGGTGTTTAAATCACATTTAAATCCGTAAAGATCTATTTTGGCACAGGTTTATTTAATCCATTGATATAGCAATTATTTCATTATCAATGTAGCATTTAGTTACACCTCTTACAACTACCACATCCTGCTAAATGACTGACCAGATATGTTTTTAATCTTAAATTTTAGTACATCACTTATTCAATAGCAGCATCTTCACAACTTAAAAAATAGTATATGCAAATCTACTCAACATCTAGGTAAATCCAAAGCTCCTACACAGACAGAATAAAAGGACAAGACATGACGACATGCTACTACGTATATTGCTTTCAGTACTCATCACATTTGTTCTATTTTCCCAGTTACTAAAAAAACAAACAAAAAAAAACCAAAAAAAAAAAACCCAGAAACCCCCATATGTACTTTCAGTACTGAATACAGAAACAACAAAACAGAAAGCTGCTCCTTGACACTATGTTGGCACCTTTTTATAGTTTTCACATTAAATTGTCACAGTAATATCTTGCTTTTAGTGTGTCTTAATCAAATTGAACGATCATGTAACGTTTCTTAACATAAAAATTATCTGGGGGATCTACCAAGCTCTGAACGAGCTCTGAAGTGTCTAATGAAGTACTGCATCATGGGTAAAACCGAATGCACAGATGCACTCTAAAATGCGGAGGCGCTCGATTGCCATCGCTTCCTCGTCTCGATCTTCAAGTCTGAACTACTGTGTCCCTTCATTTGAAAAGAAACGCTCATTTTGCACCTCAAAAACGTTCAACTATCTTTCTGAGTACTTGGAGTCGTTGCTGTTTCAAACGCTTGTTAGACCTCCTCACGTAGGGCACAACTGCTTGACAAATTCATATCTATCCAAACTTATCACCTTTACACGCATATACACACACATGCACACCATACAAACACATTGATGGCTCATAGTAAGTCCCTTTTTGAAGGTGTGATGTGCTTGAACGTGATCTACGGCAAGCTTCTAGTTCTAAACTGTAGGCGCATCTTCCCTTTCGCATTGTCAGTTTCGTGAAAGGGCAAGCAGACATGCACTGTTACACCAGACATCGCCACCCATGGAGAGATGTGAGAGAAAAGAGGGTCTCTGGGTTGATGTGTCAGAATGGGGGTGCACAAAGGTAAAAAGGGGGGTTGAGAAGAGGTGAGGGGAGGTGATGGTTTTTAGATGAGAATAAAGAAGCCTCCTTACCAATTGGTTCAGATTTACTCTCCCTGGTGCTCCAATAGCAAAGGAGAGGAAAGAATCATAATTTTAGTCAGGGGGAGAGAGAGCACAGTTCTGTCTTTCTCTGTTGGTCTGATTCTTCTTTGGGAAATGCTCTCTGTGCTAACGTGTACAAGTCTTGTGGGTAATGAGGAACAGTTTGGTATTTTTAAGCTCATTCCAGCCGGTAAAGAATGAATATGTTGTTTAGACACAGAATAGATTTGGAGGACACATAGTTTAAACATACAAAATATACCATCCTCTGCCCCTTCACGATAAATATACACGGTAGGCTGGCGGTTAGTTAGTGCACACTTGGAAAGTTAAGGTTGGATACTGCAACATGATGCCAAAAAACTGCTCAGAAGAGTCTGACCTCAACCTAACAAACCATCCAGGCTTCTTTTCCACCCTACACTCTTAAAAATAAAGGTTCTTTACGGTGGCAAAAGGGTCTTTAGATTATTAAAATGTTCTTCACATTAAGGAAAAAACAACTGCTCAATGAAAGGTTCTTCGAGGAACCAAAAATGGTTCTTCCATGGCATCGCTGCGAAAAAAAACCCCTTTATTTTTAAGAGTGTACGGTGAGCGATACATTGACTCCATGGAGGCTGTTATAAATATGAGACGTTCCACATGAGTACATTCCATCATGGTGATGCATCAATACGATAACGATATAGAAACCCTGACTTTTTTGGCCTTCCATCACGGCCTCCACACTTCACAGTGCATTAAGACGAAATTCAGTGTACTCAGATTCAAAACAAAAAGAAAATAGGACCTTATTAGCAGCACATACGTCGCACATGTTTAGTTCTGACCTGCACAGGAAGATCTTCACATGGGCAAGCCTGTTCAGTATAATGCAACCAGAACCAGTATATTAAAAAAATGTTGTGGTTATCATATTAGCCACAATAGAGCAGACAACCAGGGACTTCCAGCGCAGACCATGTTACTAAGCAGCCTGTGCCGATCAGAATTTGTTCGTAGTCATTCAGTAGTATGTGTTCATGAAACGCCTCAGAGCTCTGAGGGCCAATTTCTGATTTGATAAGGAATATCTACACAAATTTTCCAGCACATTTGCGCAGATATTCAACTGCAGCGGCTCAAAGTGCACAATGTCTCGCACTGCAGAAGGGCAGCGTAGAGTAAAGACGGGGATATGTTTTGGGATGTTACAGAAAGAGATTGGCTTTCATATAAAGTCGTTCTCTGATACACTCCCTTGGACTTGTGCAAAGACCTACATTCTCATTCAGTAGATATGTGAATAAATTGTCTAGTCCCACTGTGATTTCAAGTCTGCGTATGTTTAGTTGCATTTTCAGCATTTAAATCTGGTAATAGTTTGCTGAGGGTGTGTGTTTGTGTGTATTAATATCACTGTACAGTACATCTGCCCCTATTCTCTCTGTTGGTGCCGACGGTGCAGTTATCACTGGACGTTAAATAAGACATATATTACATGGACACACGATTCAATCTACTTAAATAAAAAACTAAATCCAAAATATTGTCTTTACATTCATGTCAACCTGAATTCACAGATTAAGAAAAACAAAAAAAGGAAATACCTCAGTTCTTATGGGTGAAATCATATTAATAAATAACGTTGATGGTGATGATAATTTGTAATAATAATAATAATAATAATAGTAGTAGTAATAATAATAATGATAATAGTATTTGTATAAACACCAGATCTCGAATCCCATAGAGAAATGCCACAAACTCTAGGAGCTCTGGTACGAAAGATTCAGGTGCATTTTGCGTCCTGGCCTATGTCCGCAACATGATCTACAAGCTTCCCTTATGCTAACAACATCTCTAGTGGCAATGCACCTGGTCGAACTGGAACCCCAGGTCAATGTCTAGTGACGCTGAGACCCTGCAGCAGCCTCGCATCCCCTGCCCTATCCTGCCCGGCACGGGGCAGGGGGGGCTGGGGTGGGGTATGGGGTGTCACAGACTGGGGGGGGGGATATATAATCAGTCTCAGACCCTCTTAAAGAGGAGGCATGGGCGAAAGGGTGGGAGTTAAACTAAAGACTAAAAATAAAGAACAAAAATCTGTCAGCTAGGAGGGGATGGGGGTGGGGAAAGGGCTGATTCCTGGGATTGCTCCACCCCATTGTCCCCCATCCGACCACCTTGCCCACCTGCTGGGAACTGCAGCGCGGCAGCATGCCAGGTTGAAATGCCATTCACTGCTGTCCAGGAAAATGCACAAAAAAACAAAAAACAAAAAGAAAAACAAAACAAAAATCAACCAATAAAAATTCCAAAAAGATTCAAACTTAAGAAATAAACCCATATTTACATTTTACACATTTTTCTTTTTCAAATTTTCCACTTTGAGAGGAATTTTTCCTCTGTTTTTTTTTAATACTGAGATTTTTCCCACAAAGAAAGTGGCTGATTTTCGTCGTTATTCGCGCCCTCCATCTTTCTCTGTATCTTCCCCATCCCCCACTCTTTCTCTCTCCTTTTTTCATACTCCCTGTTTTTAGCCCACCTTCTGCGGATTGGTGGCCCTCACACCCTGCTCGTATGTGATTCGCTGGCTGATAAGATATTGGGCTGCCTGTGTAGCGGCTGGCGATCCGGTAATGGTAACTTTACGGTTTCTGGTGCCAGGAACAAACTCTCCTTTTTTAGAGATCTGAATGCGGGCTCCCGTCAGTTCTTGGTACTCCACAAGCGTTTTGCCTCCCTTCCCCAAAATGGCGCCCACTAAGTTCTCCGGCACTGCAATCTCCACCACATCTTTGGCCCCCTCTGTCAGCTTCTCAGTGGCCAGTAGGGAGCTCGCCACCAGCGGAGAAGCGGCACTCAGGTAGCCATTGGTGGCTCCAGTGGCGGCTGCGAGCGATCCTAGCGTGAAACCTCCCAGGCTGGTCGCTGGGTGGCCGGCGCTGGTGGATGCGTCATTGGCGTATGAGGCTAGCAGATTGGCGGCCGCGGCTGCAGCAGGGTTAGCGCTTGCAGCCACAGCGGCGAGGACTCCTGAGGCCGCTGCAGGGTTGAGCCCTAGACCCAGGGAGTTGGTATTGTATCCATAGCTGGCTAACGTGTTTAGTGCGGACGTGATAGCCAGCAGGTCATTCCCTGAGAAGCTGGACATGGTGGTGGGGAAAGCACCCACTCCAGCCAGACTGGCCTGCCCCAGGAGACTGGAGGCCGTTGCCGCCGCTGCTGCGGCAGCAGCCGGCATCACCTCTGCTGAGTTGGCGTACGGAGAACCAGTGGGGTTGGAGTTGGCCACAGGGCCGGAGATGTTGGAGTAGCTGATGTTCAGACAGCTGCTGCTCTGCGGGTCCTCCTGGATCTTCTGCACAATGATCTCGACGGCCTTGCGGTTCTGCTCGGGCTCCCCGCTGATGGTGACAACGCGTTCTTGCAGGTTGATACCTTCAGGTTTCTGTGAGAGCTGGACCCAGGCACCGGACTGCTCCATGACGGCCTTCACCGTGGCTCCACCCTTGCCGATGATCAGCCCTGCTGTACTGTTGGGCACT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU325529 True 9402 lncRNA 0.42 4 5131142 5140674

Neighbor

gene id symbol gene type direction distance location
CI01000072_05099789_05108316 NA coding downstream 21361 5099421 ~ 5109781 (-)
CI01000072_05053749_05071797 BLMH coding downstream 59345 5053644 ~ 5071797 (-)
CI01000072_05039232_05046122 SLC6A4A, SLC6A4 coding downstream 84668 5039086 ~ 5046474 (-)
CI01000072_04992647_05006768 SSH2A coding downstream 124374 4992218 ~ 5006768 (-)
CI01000072_04932845_04949502 GIT1 coding downstream 181640 4932700 ~ 4949502 (-)
CI01000072_05158807_05160357 NA coding upstream 17603 5158277 ~ 5161493 (-)
CI01000072_05172707_05173819 GPR4 coding upstream 32005 5172679 ~ 5174665 (-)
CI01000072_05208841_05218652 EML2 coding upstream 68167 5208841 ~ 5218652 (-)
CI01000072_05268621_05275350 NA coding upstream 127879 5268553 ~ 5275643 (-)
CI01000072_05277286_05281467 NA coding upstream 136367 5277041 ~ 5281696 (-)
G287011 NA non-coding downstream 104050 5026121 ~ 5027092 (-)
G287154 NA non-coding downstream 107549 5023345 ~ 5023593 (-)
G286962 NA non-coding downstream 249504 4878140 ~ 4881638 (-)
G287129 NA non-coding downstream 289589 4840887 ~ 4841553 (-)
G286997 NA non-coding downstream 334697 4796091 ~ 4796445 (-)
G287206 NA non-coding upstream 10050 5150724 ~ 5151489 (-)
G287210 NA non-coding upstream 21185 5161859 ~ 5162242 (-)
G287213 NA non-coding upstream 26809 5167483 ~ 5167727 (-)
G287230 NA non-coding upstream 127500 5268174 ~ 5268465 (-)
G287234 NA non-coding upstream 143412 5284086 ~ 5294759 (-)
G287021 NA other downstream 736919 4386145 ~ 4394223 (-)
CI01000072_03972493_03983836 SPA17 other downstream 1155075 3972401 ~ 3983836 (-)
G286005 NA other downstream 2131647 2993769 ~ 2999495 (-)
G285752 NA other downstream 2960484 2168048 ~ 2170658 (-)
G285766 NA other downstream 3122833 2005551 ~ 2008309 (-)
G287264 NA other upstream 240046 5380720 ~ 5382001 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G20525 NA non-coding CI01000001 null 12926343 ~ 12928606 (-)
bowfin (Amia calva) G45410 NA non-coding CM030125.1 CM030125.1 36732988 ~ 36736528 (-)