G287234


Basic Information

Item Value
gene id G287234
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000072
NCBI id null
chromosome length 5473029
location 5284086 ~ 5294759 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU325608
GGGGGGTGGGGGGTGACTTTGCATTTATTACTTAAGCCCACTTTAACTACTCCGATACCACAGCAGAAACTACTAGCCTAAACTAATACATTATTAAAGGCAAGTGAACAGACTGTAAAAAGAACAAATACTGTACACCAATTACAAGCATAGATAAATACAACATAGAGTTACAAATAAAGTATAAGGTCTAACTGTAGTATTAATTTTCGTGTACAGAAATGTAATAATTAAATGTAAAATGACACTGTTCACTGTATAAATTTAATATAGATTAATCTTTGTTAAAGCTGTGTTATGTTGTTTGCTTTACATGACAGACAACAGCAGGTATTTATAGGTTGCTGTCACTTTAAGAGTAAGACCCCATGCACGCACACATCTGATAGATACACATCCGAATTCTCACCTTGTTCAAACAAGACATAGCCGAATGTGTTTACGAGAATACTTGCCGAGAGGGGTATTTTGACTGACATAATGCGTGTATGTGTCCATCCAAGTGCATTGAGGAAAGAGAAAGAGAATCCGTTTAACCACTAGTCTCTGTACTCAAGCATGAAAATGAAAAAAAAAAGATTAAAAAGAAAGCTGAGAAACATCTTATCAGACATGCATGAAACAACTCTAAAAAAAAAACCAAGTTTTTAATTTTCAACAAGTTTGGACACAACACAAGGATTAGAAACTAGACTCTATCCTCAAAATAAGAAAAACCTGCTGCTGAATAGAAACTTGATACACCTCTCTATACAGGGCCAGCCCAGGCTCTGTTGGTGCCCTAGGTGAGATTTTACACACCCTTACCCCCAAAGAATGCAAATGCCTTTCTTTCATATGAACTGCAATTTGCTATAATATGATTAGTGATAAACATTAACATAATATGAAGTAAATAAATGGTGATAATAAACAACAAATCTGTAACAAATCTGGAAAAAATAATCACTCAAGAATTAAACAAACTACAAATGGACCAAAAAAAAATTGACAATAAACTAGCCTATTATCTGTCATCTCCATTTTTGAGCAAACACTGGAAAATGATTTACATAAACTTTAATGACTGCAATTCAGGAATGCTTTAGACTACAATCCTAGTCATTGGTTTCATTTAAAGAAGACCAAGAGTTTTTTGGTCAAGTAAATGCTAGTAACAATATAACTGAAATTTTAAAAATCATTACAGTTTAAATGTATTTTAAAGAAAATACACTAACATTGCGGGTCATTTTTGCTTCTTATAAACTGCAAGTAAAGTGTAGTTTTTCCAGGAAAGAGGTTCTAAAAAAAGCTATTTCAGAATAGTATACACATCAATGTCTGCCATGAGTAGTTGTTAACTATTTTCAAAAGCATAGTTTAAGTGGCGAATGCTGATGGCAAAACTAATACCCTTGGTAAATGAGCGTTCATAACGTGTTAAGATGCATCATAATCACGTCATGATGTAAATGCGTGCAAAAAACGCTCCATTTAAAATCCCTAAAAAAGCTGTCAATCATCTCAGAATCAGCTCATCGGGATTTCACAAAGTTCAGTTATAATCAATGAGCCTGTCTACAATGCACAATAAATCTCCTTATTTACATCATGTCGAACTTCGTTTGTTAAAATGAGAGGGTTCGCGAGATGTGAGCATGCAGAAATCAACGTAGAACAACAACTCCGGTGTTTTGAGCAGTGAGTAGATTCTGACTAAATCAAACACATCTGATTGGCCACTGCGTTCAAGAAATCAACAGACATGTCTGTGATTGGCTTCATTGCTCAACACTGCAAAAACACACTGTAAAATAGAAACCCGTCTTCAAATCCGGTCCTGCCTCTCGTATGGCGCCCCCCTATCATTTTGTGCCCTAGGCAACCGCCTGTGTGGCCTATGTCAACCTGTCTCTATATCTGTAGACATTTAATTTATTTATGGTTCACTGTCTTCATTCATTCAGTATAAAACAATGCTATGTTTCAGCAAGATTGCATGAATATGTTTTGTTAGTTGCCCATATTTTTAGTAGGTTTCTTGTCTATACCGCTGGCAATTTCAGAGCAATACTTTGAAAGCTTTATTAGACGGTCTCTCACCTCATTGCCTATGATGTCAATCTTGTGTTGAACTTGTGGAACCCATTGGCGTATAATGGCGAACAGCTCTGGGATTGTGGTCCGAGAGTCTGTCAGAATCTCCATGCAGGCTGGATCATTTGGATCAAAGAAGGTAAACGCATAGTCCTTGGGCAGTGGAGCCTGTGCAGATGGATGCACTATGGGTTTCTTGCGGGGTTCATGAACAGGGCTGATGAACTCAGAGCCCGGCTGGGCCTCTTCCACCTCAGAAGTTTCCTCTTTAGTCATTCTGCTTATGTGATTGGGCCTGATAACAAGCCTCAAACCCGGGATTTCTTTCCCCTCTTTTGTCAGTCGTTGTTGTGCTATGGAGGATGGAGAGGATGCTGCGCCTTGTCCTTCTCTCTGCC
>TU325606
ATTTCTATGTCTGTTTGGTTTCATTGTGTTTTGGTTCTGTTATTCTGTTGTAGTTTGCATGTGTTCCCTAGTTAGTCTCCTTTGTTTCATTGTCCGGTATTGGTTATGTTAAGCGTTATTTCCTGAGCTTCTTCCTTGTGATTCTCTTACATGTTCCAAGTGGAATTTACTATTAATGCTCCTTTTGTTATCCTTTGGGATTGTGCGCTTACGAAAGTCTACACAGCATCTGACAAACAAATGAATATTTAAAGTTACATTTTACTAACCCCCGGTTTTACAGACAAGGCTTAAGCCTAGTCCTAGACTAAAATGTATGTTTTAGCTGTTTCAACTGAAAGCAACTTGCACTGACATGTTTAAAATATGTCAGTGTCATTATTTTGTCTGAAGATGCACAGCAGTAATGTTTTTTTTTTTTTTCTAGATATGTTTATAAAAGCTACCTAAATATCCTAATTAAACTAAGGTCTAATCCTGGCTTAATCCAAGGCCATTCTGTGAAACCAGGCTTAAGTGTCCCTGTTTTTCAGCTTTGGAATTTGCTTATCTTACACCAGATGGTTTCACAAAGACCACTTATCGTAGATGGTCTTTTAGCACATTTGCTTAGGCCCCACCCCTAACACTGAAGTACCTGAAGTACCTTATCATTATCCTTTCATAAATAGTGAAACCTTCCTGCAAATGCTTTTGCGATCCAGGAATAAAAGTCAAGTGGAAGGTAGTGTTCTGTTCATATTCTTTAACCAAAACAGCTAATCAAAATCGTGTAACTGTAAGTAAGTTGAAGATTGTACCTCTGAACACGGGAAGGTGGTGCAAAAACCCCATATTTAGGCAAACAGTGGAAGTAACGCACTCCGAATACACTGCCATCATGCTTTCCAGTGGGCTGCTCCAACTCCACACCAAACCAATAACCAGGGGCAAAGTCTGTCTTTCCAAAAAAGCGGACAATCCCTTGTTTTTGGCCTGCCACCAGCACCTGATCCCCAACCTCAACGTTGACTCCATCAGGATCCAAACTGACCCCGGACAGAGACTTCTTTCTTGGAGTCTTCACACGATCTTTCTCTTTTTTCTCTTTCTTGATCTTGCCGGTGACGCGAGACAAATCCATGCGAGGGGTTTTTGGGGTGGAGGTGACCGAAGAGGGGGTCTGCTCAAGAACTTTGCTGATTTTTGACACAGGGGCGAAGATGCCTTGTTTTGGGGAGCAGATAAAATAGCGGATCCCACCCACACTCCCGTCATTCTTGCCCTCCGCCTCGTCCAGCTCAATACCAACCCATTGCCCGCTAGCAAACTCAGTGGTGCCACACTTTGTGTCATCCAGCACCACACGGTCCCCTAGTTTGAGGCCCAGGGAGGAGAGCATGAGGTTGCCGGGGATGTTGTCATAGTTAGGCAGGGTGGCGCGGGGTAGGTTACAGCTGAGAGGCACGGCGTCCAGCAGCAACTGTTTCAGCTCTTTAGCCACCATGGCGGCTTCAGCTTTATCCAGACTCATGTCCATGGGGTCAGGGACAACCTCAGCAGGCTCTTGACCCTTATCATTCTGTAACATGCAGAGAGTTTA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU325608 False 2477 lncRNA 0.38 3 5284086 5288356
TU325606 True 1582 lncRNA 0.44 5 5292257 5294759

Neighbor

gene id symbol gene type direction distance location
CI01000072_05277286_05281467 NA coding downstream 2390 5277041 ~ 5281696 (-)
CI01000072_05268621_05275350 NA coding downstream 8443 5268553 ~ 5275643 (-)
CI01000072_05208841_05218652 EML2 coding downstream 65434 5208841 ~ 5218652 (-)
CI01000072_05172707_05173819 GPR4 coding downstream 109421 5172679 ~ 5174665 (-)
CI01000072_05158807_05160357 NA coding downstream 122593 5158277 ~ 5161493 (-)
CI01000072_05298324_05299101 DHARMA coding upstream 3452 5298211 ~ 5299126 (-)
CI01000072_05353426_05366845 NA coding upstream 58117 5352876 ~ 5366947 (-)
CI01000072_05396600_05399519 NA coding upstream 101781 5396540 ~ 5399777 (-)
G287230 NA non-coding downstream 15621 5268174 ~ 5268465 (-)
G287213 NA non-coding downstream 116359 5167483 ~ 5167727 (-)
G287210 NA non-coding downstream 121844 5161859 ~ 5162242 (-)
G287206 NA non-coding downstream 132597 5150724 ~ 5151489 (-)
G287161 NA non-coding downstream 143412 5131142 ~ 5140674 (-)
G287273 NA non-coding upstream 49494 5344253 ~ 5344555 (-)
G287275 NA non-coding upstream 81031 5375790 ~ 5376098 (-)
G287276 NA non-coding upstream 87914 5382673 ~ 5382999 (-)
G287278 NA non-coding upstream 109436 5404195 ~ 5404619 (-)
G287279 NA non-coding upstream 110028 5404787 ~ 5404987 (-)
G287021 NA other downstream 889863 4386145 ~ 4394223 (-)
CI01000072_03972493_03983836 SPA17 other downstream 1308019 3972401 ~ 3983836 (-)
G286005 NA other downstream 2284591 2993769 ~ 2999495 (-)
G285752 NA other downstream 3113428 2168048 ~ 2170658 (-)
G285766 NA other downstream 3275777 2005551 ~ 2008309 (-)
G287264 NA other upstream 85961 5380720 ~ 5382001 (-)

Expression


Co-expression Network