G287264


Basic Information

Item Value
gene id G287264
gene name NA
gene type unknown
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000072
NCBI id null
chromosome length 5473029
location 5380720 ~ 5382001 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU325650
ATCCAACTGGTTTACTGTGATTTCTTGAGTTCATACATGCAATCACTGGCTTAAAATGACACAAATGAAGTATGCAAAGTTTTCATGCAAGCACACTAGAAGCCGAGCCCCTCCAAACATCACATACTTATCACAGGAGCACAGACCGCAGCATTTGCCCAGATCTGTAAGGTTTTTCTCAGCTTCCTTCATGTCCTGGTTGATCTGGTCCAGCCCTTCCTCAATCCTCTCCAGTTGCTCTGGATGACGGAACGTAGGAGTATGGAGGTTTCAGGGGTTAACGTATGGGGACGAGATAAAAAAACACAACAACAGTTGTCTCAGCAAGAAGCAACACACACCCACAAGCGACTAAACAACTACGACAGCTCTAGCCCAAAATGACAAGCAAAATGGACATAAGAACTTAAACATGACTGAGAGACATTAGGATTATGACTAAAAACACTGTGTTTGTTGTGTGAGCATGGGTTGCACAACTTTTAAGTTCATTTCAAATGTTTACATTGGGTACTGCATGAACATCTGCTCACAAAACAGCCAAAAAAAGGACAAATACGAAGCAACATCAAAGCAGGATAGGTTATCCAATGGAACAGAGGCATGGGCAGAGAGGTGACATCATTGACTGCCAAAATCCAGCCATGGCTCAGGTGTCTGGGAGGAGACCTACTTTGTACATGGCCAGATGCACAGACCACAACACCTGGCCATGTCAGTGAGATTTTTCTCAGCCTCCTTCATGTCCTTGTTGATCTGATCCAAGCCCTCTTCTATGTGGTCCAGTTGTTCTGCCCATGCGGGGGAGATGGGGGAGGGCATGGGTGGCAGCAGGAAGGGGAATTGAAAGGGGTAGAAATATGCGAGCATGCACACACAAACACATACTGGGTACATATTTCCATATGCACGTATATGGCTGTATTAATATATGTCGTAAAGGACGAGTAAATAACAAAAGATTAAGAACACATTGTCTATACTCCCACATCTTGTGCATATTCATTATCATTAGCATACAGATAATAGCTACCTGTCATACAGGCGCAACAGGATTCATCAACAACTAATGATTAATTTGCAAGTAATTAGTTCATTGTTTAGCTGCTGTATATTTGATCTCTATTTAACAGAGTGTATGAAGATAACTCATTATACCTCCCTGCTCATCCAGCATAACAAGCGTCCTGATCCCTGCATCTTTACTCTGTTGAAGAATTACAAAATAATTCAGTACAAAAGGAGATTGATACAGAAAATTCATCAGTTTTCTTTGAAACTC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU325650 True 1282 TUCP 0.42 1 5380720 5382001

Neighbor

gene id symbol gene type direction distance location
CI01000072_05353426_05366845 NA coding downstream 13773 5352876 ~ 5366947 (-)
CI01000072_05298324_05299101 DHARMA coding downstream 81594 5298211 ~ 5299126 (-)
CI01000072_05277286_05281467 NA coding downstream 99024 5277041 ~ 5281696 (-)
CI01000072_05268621_05275350 NA coding downstream 105077 5268553 ~ 5275643 (-)
CI01000072_05208841_05218652 EML2 coding downstream 162068 5208841 ~ 5218652 (-)
CI01000072_05396600_05399519 NA coding upstream 14539 5396540 ~ 5399777 (-)
G287275 NA non-coding downstream 4622 5375790 ~ 5376098 (-)
G287273 NA non-coding downstream 36165 5344253 ~ 5344555 (-)
G287234 NA non-coding downstream 85961 5284086 ~ 5294759 (-)
G287230 NA non-coding downstream 112255 5268174 ~ 5268465 (-)
G287213 NA non-coding downstream 212993 5167483 ~ 5167727 (-)
G287276 NA non-coding upstream 672 5382673 ~ 5382999 (-)
G287278 NA non-coding upstream 22194 5404195 ~ 5404619 (-)
G287279 NA non-coding upstream 22786 5404787 ~ 5404987 (-)
G287283 NA non-coding upstream 25649 5407650 ~ 5408014 (-)
G287284 NA non-coding upstream 26043 5408044 ~ 5408269 (-)
G287021 NA other downstream 986497 4386145 ~ 4394223 (-)
CI01000072_03972493_03983836 SPA17 other downstream 1404653 3972401 ~ 3983836 (-)
G286005 NA other downstream 2381225 2993769 ~ 2999495 (-)
G285752 NA other downstream 3210062 2168048 ~ 2170658 (-)
G285766 NA other downstream 3372411 2005551 ~ 2008309 (-)

Expression


Co-expression Network