CI01000075_01033320_01042574 (AP1M1.S, AP1M1)


Basic Information

Item Value
gene id CI01000075_01033320_01042574
gene name AP1M1.S, AP1M1
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000075
NCBI id null
chromosome length 1642109
location 1033220 ~ 1043695 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000075_01033320_01042574.mRNA
TTATAAAACCGATGACAGCTCTTTATTAAACTAACAAATGTCCCAGAAGTGAGCGGACTTCTGTAGATTAACGATAAAAGCGGTCAAGGAAGGCGCAAACATGTCGGCCAGCGCTGTTTATGTGTTAGATCTGAAGGGGAAGGTCCTGATCTGCCGTAATTACCGCGGTGATGTGGACATGTCCGAGATTGAGCATTTTATGACCCTGCTGATGGATAAAGAGGAGGAGGGCACGCTGTCACCCATCCTGGCTCATGGTGGAGTTCGTTTCATGTGGATTAAACACAACAATCTGTACCGTATCCTTCCACGCTGCAAACCTGCAAACTGCCTGCTGGGCTGCTTTATCATTTTATTTGTTGCAACATCCAAAAAGAATGCTTGCGTCTCCTTGGTTTTCTCCTTCCTCTACAAAATTGTTCAGGTTTTCTCTGAATACTTTAAGGAGCTGGAGGAGGAGAGTATCAGAGATAACTTTGTCATTATCTACGAGCTGCTGGATGAACTCATGGACTTCGGATACCCTCAAACTACTGACAGCAAGATCCTTCAGGAATACATCACGCAGGAAGGTCACAAGTTGGACACGGGAGCTCCGCGGCCCCCTGCGACTGTAACCAACGCCGTCTCCTGGAGGTCAGAGGGCATCAAGTACAGGAAAAACGAGGTTTTCCTGGACGTCATCGAGTCTGTCAACCTACTGGTCAGTGCAAACGGTAACGTCCTTCGCAGTGAGATCGTTGGCTCCATTAAGATGAGAGTGTTCCTCTCGGGAATGCCAGAGCTGCGTTTGGGTCTGAATGACAAGGTTCTGTTCGAGAACACTGGCCGTGGTAAGAGTAAATCCGTGGAGTTGGAGGATGTGAAGTTTCATCAGTGTGTGCGTTTGTCTCGATTTGAGAACGATCGCACAATCTCCTTCATTCCTCCGGATGGAGAGTTTGAGCTGATGTCCTACCGCCTCAACACGCATGTGAAGCCGCTGATCTGGATCGAGTCTGTAATTGAGAAGCATTCACACAGCAGAATCGAGTACATGATCAAAGCCAAATCTCAGTTTAAGCGCCGCTCCACTGCCAACAACGTGGAGATTCATATTCCAGTCCCGACCGATGCAGACTCGCCCAAGTTTAAGACCACAGTGGGCAGCGTGAAGTGGGTGCCGGAAAACAGCGAGATTGTTTGGTCCATCAAGTCTTTCCCTGGAGGTAAGGAGTACCTGATGAGGGCTCATTTCGGGCTGCCCAGTGTGGAGGCGGAGGACAAGGAGGGAAAACCACCAATCAGTGTGAAGTTTGAGATTCCCTATTTCACCACTTCTGGAATACAGGCTGTGGCAGATGCGATGTGTGCTGGTTTTTCCTTTAACCCTGATAGATGGCGCTATGAATCTGTATTTTGAAGGATTTATACACTGACAGCAACAATCAAGTTTTTTGTAATACATCTGTAGTGTTGTAACATATGTTTGAATACCAAATCACACACCCCTCATTTAAATTCAGAGATGGTTTTGAGCACACATTTCCCTTCATTACTATTCTATGATCAACTCACAAGAGTAAATTAATTTCACAAAATAGCATGCTGTTGATTTTTATCGCTGTGTTGAGCAGTGTTGTCTTGTTGAGATGCTCTTTAGGAAACCTCAATATTGTATGTGTACTTTTGCATGTCTGTGGTGGATTGGGTTCAAATATGGTAACCGTATGTGATAGTTCACCTAAAAATGAAATTTCTGTTATCAACTACTTACCATCATTTCATTCCAAACTTTTGCTCATTTGTGAAAAACAACTGGAGAAACCTGATTTCTGTCCATTCATCCAAAACTCTGATGCTTCAGAAAGCACGTAAAGAGATCGTAAAAGAAATCCATATGAATCGAGCGGCTTAAGACTTCTTATGATGAACAGATTTAATTTAGGCTTTTATTCACATATAAGCATTGATTAAGGCACATAGAGCACTCATATATGACTTTCAATGGAGGGACAAAAGGTTTCATTAAACATATCTTTGTTTTTTGAAGGTGAATTGTCTTATAGGTTTGGAAAGACATGAAGTTGAGGATTTAAATTTTTGGGTGAACTACACTCTTTTCATGGTAGATGTCTTGTTTAATTTCTTGGGAGTGTAAATGAGGCTGTGCGGGTTAGACCTTTGTTCAGCTGTTTTTATCTTGGCTGTTGATCGTTCAGCTGACGCAATATTGAAAATGTCTTTTCAACAAATTCCTGTGAACGAATGGCTCTGGTAAGTGTGTTGTGAAAACTGGATGTGCATCGATTAGACTGCATCGTTTTCATTCATGAAAAAGTAAATATGGCATCTGACCCCAGTGTTATTGACTAAAACTATTAAAAAACATTTTTTAAGTAAAATAAAGCTGAAATAAAACATAAATATATTAGATGGAAAAAAGTCTCACTGAAATAAAATACATTTTATGTTATTAAAGTTACATAAAAGTTAGTTACTAAAAATGAAAGCTAAATAGAAATATCTAAAAAACAAAAATGA

Function

symbol description
ap1m1 Predicted to enable clathrin adaptor activity. Acts upstream of or within brain development and digestive tract development. Predicted to be located in Golgi apparatus and clathrin-coated vesicle membrane. Predicted to be part of clathrin adaptor complex. Predicted to be active in clathrin-coated vesicle. Is expressed in several structures, including central nervous system; digestive system; eye; gonad; and heart. Orthologous to human AP1M1 (adaptor related protein complex 1 subunit mu 1).

GO:

id name namespace
GO:0048565 digestive tract development biological_process

KEGG:

id description
K12393 AP1M; AP-1 complex subunit mu

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000075_01033320_01042574.mRNA True 2523 mRNA 0.41 11 1033220 1043695

Neighbor

gene id symbol gene type direction distance location
CI01000075_01015651_01022674 NA coding upstream 10407 1015651 ~ 1022813 (+)
CI01000075_00917306_00921588 NA coding upstream 111500 917306 ~ 922416 (+)
CI01000075_00877796_00880322 NA coding upstream 152776 877796 ~ 880444 (+)
CI01000075_00864628_00867240 NA coding upstream 165143 864029 ~ 868077 (+)
CI01000075_00821649_00821906 NA coding upstream 211149 821498 ~ 825595 (+)
CI01000075_01159479_01160597 KLF2B coding downstream 115784 1159479 ~ 1160663 (+)
CI01000075_01364135_01365758 EEF2B, EEF2L2, EEF2.2, EF2, EEF2 coding downstream 320440 1364122 ~ 1365843 (+)
CI01000075_01404076_01444348 UNC13A coding downstream 360381 1404076 ~ 1444410 (+)
CI01000075_01451280_01460210 RAB11B.2.L, RB11B, RAB11B.1.S, RAB11B.2, RAB11B.1, RAB11B, RAB11BA, RAB11BB coding downstream 407585 1451280 ~ 1461636 (+)
CI01000075_01466937_01467865 NA coding downstream 423242 1466937 ~ 1468061 (+)
G288994 NA non-coding upstream 23452 1009550 ~ 1009768 (+)
G288912 NA non-coding upstream 40273 988135 ~ 992947 (+)
G288916 NA non-coding upstream 92166 940750 ~ 941054 (+)
G288956 NA non-coding upstream 119295 913645 ~ 913925 (+)
G288948 NA non-coding upstream 160365 872398 ~ 872855 (+)
G289272 NA non-coding downstream 30195 1073890 ~ 1074094 (+)
G289275 NA non-coding downstream 35797 1079492 ~ 1079785 (+)
G289278 NA non-coding downstream 56152 1099847 ~ 1100131 (+)
G289283 NA non-coding downstream 63469 1107164 ~ 1107367 (+)
G289290 NA non-coding downstream 97153 1140848 ~ 1141397 (+)
G288755 NA other upstream 725299 305108 ~ 316301 (+)
G288708 NA other upstream 795949 235398 ~ 237271 (+)
G289319 NA other downstream 556486 1600181 ~ 1605306 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_015970 ap1m1 coding NC_007113.7 CM002886.2 55429988 ~ 55492315 (+)
bowfin (Amia calva) AMCG00005980 ap1m1,LOC103354064,LOC107696211 coding CM030142.1 CM030142.1 13936793 ~ 13948464 (+)