XLOC_010817


Basic Information

Item Value
gene id XLOC_010817
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 31760113 ~ 31761131 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00021810
CATCTTTTTTATACTGTCATGTTGTCATCAAAATGACAATTTCTCACAATGTCAGAAAGATAtcatataattttcttttttttttttttttggacagcaCAATATCCGCCATCTTGTAACGGCCAACATGTCATTAATGGCAAGATCTAACTTGGAAAAATTAATAATCTTCCACTGGAGAGAATGTTGTAGTTTGCGTTTTTTTGAGTGCTTTAACATGTAACATAGGCTAATTtacagccctgctgaaaaaaaaacaatcaaaagaaaTCAAATAGAAACGTAAACTTTTAATTGAAGATTTATGTGTGTATGTTAGAAAGTGTTTTTGAATCCAACTGGGAAATTAGCGGATGGGTTAGGATGGAgctgaaaaagaagaaagaacaagttaataaatgacaaaaaaaaaaaaaaaatacaggatggGGAAATTATGACAATTTACTAAAGTGGGTGGGTGTAGGCAGATAACTTATCAGAGCAAATATGTCTTGGGAATTGAAGACTTGAAAGAGGAGATGCACAGGACTTTAGTTTTGTTAGTCAAGCCTTCACATTGGATGTTATTAGATCAGTCTGCATGGCATAGATGCaatgtttgatttgttttgtgtaAGATCAGAATCGGACATTGGTTCACTGTGCGTGTACAACCACATATTGAACAGAAGAGGACAACAACATGTCATGTGGGTTTCATCTCTTTTAATGTTGATTTGGCTCACTCTTGGCTTGAAATTAACTGGTTGTTTTGATACCATGGTGACTTTGAAGAGTACCTGTACATCTCCAGAAATGGGTAAGTTGTGTTAGTTATTTTGTCTGTAAAGATTAACTTTATTCTAacctctgaattttttttttttcgaaatatgttttgcatgtttcttttttattccttttttaaatgagcttttttttGCATCCAGCC

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00021810 True 934 lncRNA 0.33 2 31760113 31761131

Neighbor

gene id symbol gene type direction distance location
XLOC_010816 ptpn6 coding downstream 3150 31720042 ~ 31756963 (-)
XLOC_010815 rbp5 coding downstream 42100 31706841 ~ 31718013 (-)
XLOC_010814 c1s coding downstream 73511 31676281 ~ 31686602 (-)
XLOC_010813 c1r coding downstream 84377 31662256 ~ 31675736 (-)
XLOC_010812 wu:fd46c06 coding downstream 98577 31658196 ~ 31661536 (-)
XLOC_010818 chd4b coding upstream 694 31761825 ~ 31791165 (-)
XLOC_010819 cdc42l coding upstream 54113 31815244 ~ 31824525 (-)
XLOC_010820 NA coding upstream 117554 31878685 ~ 31881623 (-)
XLOC_010821 NA coding upstream 121017 31882148 ~ 31892032 (-)
XLOC_010822 rbfox1l coding upstream 138996 31900127 ~ 31919568 (-)
XLOC_010626 CR392024.2 misc downstream 10864938 20895112 ~ 20895175 (-)
XLOC_010811 CR855311.4 non-coding downstream 108930 31646390 ~ 31651183 (-)
XLOC_010809 CR855311.1 non-coding downstream 131426 31623975 ~ 31628687 (-)
XLOC_010805 CR855311.2 non-coding downstream 248406 31508827 ~ 31511707 (-)
XLOC_010802 NA non-coding downstream 352427 31385083 ~ 31407686 (-)
XLOC_010800 NA non-coding downstream 515432 31243780 ~ 31244681 (-)
XLOC_010828 CR854927.1 non-coding upstream 266948 32028079 ~ 32039063 (-)
XLOC_010829 NA non-coding upstream 282258 32043389 ~ 32049993 (-)
XLOC_010831 CR854927.2 non-coding upstream 391068 32152199 ~ 32163795 (-)

Expression


Co-expression Network