XLOC_001084 (elf2b)


Basic Information

Item Value
gene id XLOC_001084
gene name elf2b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 13957235 ~ 13989643 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00001745
GatgaatgtaataataaatatcagCTTTGCCacaacagaaataaatgacatgaacatttaaaaatatattcaaatggaaaactaatatttttatttgtgataGGTCACTGTTtccatttgtactgtatttttgaacaaataaataaaacttggtaataaatcaagaagcttctaaattttataaaaaaaaaatctttttattttttgtttgttttgtttattgcagTGGAAGCATCAGTTCATGGTGTGCAATGCTCTGATAAAACCATCGAGGCCGCTGAAGCCCTTCTTCACATGGACTCTCCCTCCAGTTTGCGTGGAGACAGAAGCCCAGAGGTGTTTGTGCCTCCATGTGTCAACACTTCAGAGTTCCTGCATGCTGCCATGCGACCTGATGTGCTGACCGAGACGGTGGTTGAGGTCAGCACTGAGGACATGGAGCCCATGGAGGTGGTTACTGTCATTCAGGAGCCTGAGATGCTGGACACTGAACCCAGCAAGAGAAGAAAATcgGGGAGGAAGCCCAAACCCCATCACATTTCTAATGGATCTCCAGATATGGGTATCAAGAAGAAGTCTAGAGAAGGAAAAGGAAGTACATACCTGTGGGAGTTCCTGTTGGACCTGCTGCAGGATAAGAACACCTGTCCCAGATACATCAAGTGGACACAGAGAGAGAAGGGCATCTTTAAGCTGGTGGACTCCAAAGCGGTCTCAAAACTCTGGggcaaacacaaaaacaaaccagACATGAACTATGAAACCATGGGTAGAGCGCTCAGGTATTACTATCAGAGAGGCATCTTGGCTAAAGTCGAGGGTCAGAGGTTGGTGTATCAGTTTAAGGAAATGCCTAAAGACATTGTTGTCATCGATGATGACAAGTGTGACCCGGGTGATGATGTAATAGGAGAGAAGACCTACGAGCGCGTTCCTCCTTCATCTGACACTCTATTGACTGATCTTTCCAAAACCCCGACCATCTTGAGAGCGGCCGACAGGACTGTGCTTCATCCAGGCTCCCCGAAAGCTAAAGCTGCACTCACTGCAACTCCTGTTCAGCGCACAGTAATGGTGTCCACAGCAGATCCGTCCCATGCCACCATTATTTCCAATGCTAATGCACCCAGGACTGTGCGGGTTGCCATGCAAGTGCCGGTCGTCATGACTAATTCTTTGGGACAGAAGATCTCCACGGTGGCCGTTCAGTCCACTAACCCCTCGCTCCTCACCACAGCGCCCACCAACACCGGCTCACCGACTGGCACCAACGCCCCTAAAGTCTTGATCCAGACCATGCCAACGATGGTGCCCGCCACCGCAGAGAACGGAGATAAGATCACGGTCCAGCTCGCCAAGATTATCACCATCCCCGCAACCCAGCTCACGCAGTGCCAGCTACAGGCCAAACCCGGCACCCCAACAGGTATCAATCTAATGGGTGCTCCGCTCACAGTCCGGGCTCTGACACCCATGTCTGTGGCACCAGGGACGCAGGTGGTTAGACTGGCTGTTCCAGCCCAGCAAAGTCCAGTGCAGGCAAAGACGCAAGTACCTGTTTCAATCCAAACGCAAACTCGCATCCCAATCTCCGTTCAGACTGCATCTACTGTACAGTCAGTCCCGCTGCAGATCCAGATTCAACAGAGCCAACTCTCTCCAAAAGAAAAGACAACAGAATCCAAACCTGACATCACCGTGCTGGACAATCCCACGCTCAAAGTGCCAGAGGAAGCTTCAAACCCACAGTCTGAAGCCGAGAGCTGAAGAGCGATGCGATTGGTCAGTCTCAGACAATAATAAATGAACTTCTATTTCCCAGATACTCTTTAATCACATTCTGGGAGAGCAAACTGGAGATTTGTTGACTTGTACAGTTTCGGAGTTTAAGTGTGgtttcattttacaaaaaaaagacatCATTAAAAAACCTGCCTTTATTCGGCACCACAAATCTCACATCATGTGGATTTAATCTGGATGTCCGTCATTTCAATTATGAGTTGTTAAAGGGACCAATGTAAAGTACACTAcagttcttttttctttttaaatgacactAATACCATTTAAGCAGAACACTAAAGAGTGAAGTAGACAAATATGTGAACTTTAAAGGGAGGATAAATTCAACTTTTTATAATCTCGTATAAAGAGTTTCTCTCCCTTGAATATTAAAATTGCCAGGTGAAACCAGCAGTTTGTTTTGACGATCACTGTGAGCGCACGCTTCTGCCTGTGTTTCACAGGAACGTGTCAAGTCTCCCTCCACTTCCACTAAGGGAAGAAATGGACTTTGTATATATGAACTATACAGTTTACTGAATTTATAAACAAAGCAGCCTTAGaacagttttgttgtttctttttaagTCAAGCTTGTTAAGCTTTTGTTTTTAagctcatgttttttttcttcttttctcctCGTCATTGTACCAAGCACAGTATTATTGGCAAATTTACTaactaaaagcattttttgcattctCACCATCCCAATCTCGCAGAATAAAAATggccatagtatttgtttgtaaTCAGATCTGTATCCAAATCCTGGAACATTACCCATATGTCAAAaaacacgagagagagagaggaaaaaggaAAAGGTCAATCAGCAGCGTGCATCCTCACTGCAAATACATTTCTTCTGCTTCTGTTTTCTTTTGCTTTATATTAGTTCTTACACAGGGGAGAGGAAGATGTTTGTGTTCAGAGTAATCTAGTTTGTATATTCAACATTTGAAGTACATTTCTATTTTGTTGTACTCTTGTTTCAAAGTGTACTCAAGTAGATTTTActcaaat
>TCONS_00001746
GGAGGCGGAGTGATCTGCGAGTTGTGCGTCTCTAAACGCTTTCAATGCGAGTCAATGTGAATCTGCACCTCTGGACGAAACATGGCGACGTCGCTGCATGAGGGACCCGCTAACCAGCTCGATCTACTTATCCGAGCAGTGGAAGCATCAGTTCATGGTGTGCAATGCTCTGATAAAACCATCGAGGCCGCTGAAGCCCTTCTTCACATGGACTCTCCCTCCAGTTTGCGTGGAGACAGAAGCCCAGAGGTGTTTGTGCCTCCATGTGTCAACACTTCAGAGTTCCTGCATGCTGCCATGCGACCTGATGTGCTGACCGAGACGGTGGTTGAGGTCAGCACTGAGGACATGGAGCCCATGGAGGTGGTTACTGTCATTCAGGAGCCTGAGATGCTGGACACTGAACCCAGCAAGAGAAGAAAATcgGGGAGGAAGCCCAAACCCCATCACATTTCTAATGGATCTCCAGATATGGGTATCAAGAAGAAGTCTAGAGAAGGAAAAGGAAGTACATACCTGTGGGAGTTCCTGTTGGACCTGCTGCAGGATAAGAACACCTGTCCCAGATACATCAAGTGGACACAGAGAGAGAAGGGCATCTTTAAGCTGGTGGACTCCAAAGCGGTCTCAAAACTCTGGggcaaacacaaaaacaaaccagACATGAACTATGAAACCATGGGTAGAGCGCTCAGGTATTACTATCAGAGAGGCATCTTGGCTAAAGTCGAGGGTCAGAGGTTGGTGTATCAGTTTAAGGAAATGCCTAAAGACATTGTTGTCATCGATGATGACAAGTGTGACCCGGGTGATGATGTAATAGGAGAGAAGACCTACGAGCGCGTTCCTCCTTCATCTGACACTCTATTGACTGATCTTTCCAAAACCCCGACCATCTTGAGAGCGGCCGACAGGACTGTGCTTCATCCAGGCTCCCCGAAAGCTAAAGCTGCACTCACTGCAACTCCTGTTCAGCGCACAGTAATGGTGTCCACAGCAGATCCGTCCCATGCCACCATTATTTCCAATGCTAATGCACCCAGGACTGTGCGGGTTGCCATGCAAGTGCCGGTCGTCATGACTAATTCTTTGGGACAGAAGATCTCCACGGTGGCCGTTCAGTCCACTAACCCCTCGCTCCTCACCACAGCGCCCACCAACACCGGCTCACCGACTGGCACCAACGCCCCTAAAGTCTTGATCCAGACCATGCCAACGATGGTGCCCGCCACCGCAGAGAACGGAGATAAGATCACGGTCCAGCTCGCCAAGATTATCACCATCCCCGCAACCCAGCTCACGCAGTGCCAGCTACAGGCCAAACCCGGCACCCCAACAGGTATCAATCTAATGGGTGCTCCGCTCACAGTCCGGGCTCTGACACCCATGTCTGTGGCACCAGGGACGCAGGTGGTTAGACTGGCTGTTCCAGCCCAGCAAAGTCCAGTGCAGGCAAAGACGCAAGTACCTGTTTCAATCCAAACGCAAACTCGCATCCCAATCTCCGTTCAGACTGCATCTACTGTACAGTCAGTCCCGCTGCAGATCCAGATTCAACAGAGCCAACTCTCTCCAAAAGAAAAGACAACAGAATCCAAACCTGACATCACCGTGCTGGACAATCCCACGCTCAAAGTGCCAGAGGAAGCTTCAAACCCACAGTCTGAAGCCGAGAGCTGAAGAGCGATGCGATTGGTCAGTCTCAGACAATAATAAATGAACTTCTATTTCCCAGATACTCTTTAATCACATTCTGGGAGAGCAAACTGGAGATTTGTTGACTTGTACAGTTTCGGAGTTTAAGTGTGgtttcattttacaaaaaaaagacatCATTAAAAAACCTGCCTTTATTCGGCACCACAAATCTCACATCATGTGGATTTAATCTGGATGTCCGTCATTTCAATTATGAGTTGTTAAAGGGACCAATGTAAAGTACACTAcagttcttttttctttttaaatgacactAATACCATTTAAGCAGAACACTAAAGAGTGAAGTAGACAAATATGTGAACTTTAAAGGGAGGATAAATTCAACTTTTTATAATCTCGTATAAAGAGTTTCTCTCCCTTGAATATTAAAATTGCCAGGTGAAACCAGCAGTTTGTTTTGACGATCACTGTGAGCGCACGCTTCTGCCTGTGTTTCACAGGAACGTGTCAAGTCTCCCTCCACTTCCACTAAGGGAAGAAATGGACTTTGTATATATGAACTATACAGTTTACTGAATTTATAAACAAAGCAGCCTTAGaacagttttgttgtttctttttaagTCAAGCTTGTTAAGCTTTTGTTTTTAagctcatgttttttttcttcttttctcctCGTCATTGTACCAAGCACAGTATTATTGGCAAATTTACTaactaaaagcattttttgcattctCACCATCCCAATCTCGCAGAATAAAAATggccatagtatttgtttgtaaTCAGATCTGTATCCAAATCCTGGAACATTACCCATATGTCAAAaaacacgagagagagagaggaaaaaggaAAAGGTCAATCAGCAGCGTGCATCCTCACTGCAAATACATTTCTTCTGCTTCTGTTTTCTTTTGCTTTATATTAGTTCTTACACAGGGGAGAGGAAGATGTTTGTGTTCAGAGTAATCTAGTTTGTATATTCAACATTTGAAGTACATTTCTATTTTGTTGTACTCTTGTTTCAAAGTGTACTCAAGTAGATTTTActcaaat
>TCONS_00001747
attatttattatttcattaaacatCGAGGCAGTAATTAACTTCTGAGGGTgtgggctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctttctctttatcttctttctctttctctcggtCGGTGTCTTACTGCTATGATTCTGAGCTGGATACAGTCTGCAAAAACAACATTGTGTCCTCTGTGCCTGATCACCATAGAGTCTGGTTTGACTTGCACTAGTGGGTAGTGCTGGAggcccatcatcatcatcatcatcagtagtCAGTGAACTAGTTCAGTGTGTCTGTTTGGAGAGACccgtatatatgtgtatgtgatGATCAGGTGTGTTAGCGTTTAGCCGCTAACGACAACAGTCTGACGGGCTCTCACACACCACCGCGGCCAAACTCCATGTTTCTTATATCTGTGTAAACCAGACCTACTCAGAGCGTGGGTTTTATTCGGAAAATCAGCTTTTTAAGTCCTGGAGTTTGCCACAGGAGGTCAGCAGAGTGTGGGGTATGAGTCATGACTTCTGTGGTGCTTGTAGACAGTGGAGGAGCAGTGGTGGAGTATGTCACTGCAGTCGATGACCATTTACCGGAGGAGGGTGGCGTGTATGAGGTGGAGGGTGAAATGGAGGGAGAGGTGGAGGGCGATGTGGAGTATCCAGCAGTGATTGTGGAGCCAGTGCCCAGCGCGCGGATGGAGCAAGGCTTTGCTGCTCAGGTGCTGGTGTACGATGATGAGACATACCTGATGCAGGGAGTAGCTGAGGAGCAGGAGGTGGAGACAGAGGTGCTGGAGACAGTGGAAGCATCAGTTCATGGTGTGCAATGCTCTGATAAAACCATCGAGGCCGCTGAAGCCCTTCTTCACATGGACTCTCCCTCCAGTTTGCGTGGAGACAGAAGCCCAGAGGTGTTTGTGCCTCCATGTGTCAACACTTCAGAGTTCCTGCATGCTGCCATGCGACCTGATGTGCTGACCGAGACGGTGGTTGAGGTCAGCACTGAGGACATGGAGCCCATGGAGGTGGTTACTGTCATTCAGGAGCCTGAGATGCTGGACACTGAACCCAGCAAGAGAAGAAAATcgGGGAGGAAGCCCAAACCCCATCACATTTCTAATGGATCTCCAGATATGGGTATCAAGAAGAAGTCTAGAGAAGGAAAAGGAAGTACATACCTGTGGGAGTTCCTGTTGGACCTGCTGCAGGATAAGAACACCTGTCCCAGATACATCAAGTGGACACAGAGAGAGAAGGGCATCTTTAAGCTGGTGGACTCCAAAGCGGTCTCAAAACTCTGGggcaaacacaaaaacaaaccagACATGAACTATGAAACCATGGGTAGAGCGCTCAGGTATTACTATCAGAGAGGCATCTTGGCTAAAGTCGAGGGTCAGAGGTTGGTGTATCAGTTTAAGGAAATGCCTAAAGACATTGTTGTCATCGATGATGACAAGTGTGACCCGGGTGATGATGTAATAGGAGAGAAGACCTACGAGCGCGTTCCTCCTTCATCTGACACTCTATTGACTGATCTTTCCAAAACCCCGACCATCTTGAGAGCGGCCGACAGGACTGTGCTTCATCCAGGCTCCCCGAAAGCTAAAGCTGCACTCACTGCAACTCCTGTTCAGCGCACAGTAATGGTGTCCACAGCAGATCCGTCCCATGCCACCATTATTTCCAATGCTAATGCACCCAGGACTGTGCGGGTTGCCATGCAAGTGCCGGTCGTCATGACTAATTCTTTGGGACAGAAGATCTCCACGGTGGCCGTTCAGTCCACTAACCCCTCGCTCCTCACCACAGCGCCCACCAACACCGGCTCACCGACTGGCACCAACGCCCCTAAAGTCTTGATCCAGACCATGCCAACGATGGTGCCCGCCACCGCAGAGAACGGAGATAAGATCACGGTCCAGCTCGCCAAGATTATCACCATCCCCGCAACCCAGCTCACGCAGTGCCAGCTACAGGCCAAACCCGGCACCCCAACAGGTATCAATCTAATGGGTGCTCCGCTCACAGTCCGGGCTCTGACACCCATGTCTGTGGCACCAGGGACGCAGGTGGTTAGACTGGCTGTTCCAGCCCAGCAAAGTCCAGTGCAGGCAAAGACGCAAGTACCTGTTTCAATCCAAACGCAAACTCGCATCCCAATCTCCGTTCAGACTGCATCTACTGTACAGTCAGTCCCGCTGCAGATCCAGATTCAACAGAGCCAACTCTCTCCAAAAGAAAAGACAACAGAATCCAAACCTGACATCACCGTGCTGGACAATCCCACGCTCAAAGTGCCAGAGGAAGCTTCAAACCCACAGTCTGAAGCCGAGAGCTGA

Function

symbol description
elf2b Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific. Predicted to be involved in cell differentiation and regulation of transcription by RNA polymerase II. Predicted to act upstream of or within regulation of transcription, DNA-templated. Predicted to be active in nucleus. Is expressed in endothelial cell. Orthologous to human ELF2 (E74 like ETS transcription factor 2).

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0030154 cell differentiation biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-031215-1 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific. Predicted to be involved in cell differentiation and regulation of transcription by RNA polymerase II. Predicted to act upstream of or within regulation of transcription, DNA-templated. Predicted to be active in nucleus. Is expressed in endothelial cell. Orthologous to human ELF2 (E74 like ETS transcription factor 2).

Ensembl:

ensembl_id ENSDARG00000079626

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00001745 False 2814 mRNA 0.43 6 13957235 13964284
TCONS_00001746 False 2727 mRNA 0.46 7 13957235 13968153
TCONS_00001747 True 2364 mRNA 0.51 9 13958282 13989643

Neighbor

gene id symbol gene type direction distance location
XLOC_001083 NA coding downstream 25735 13853471 ~ 13931500 (-)
XLOC_001082 BX539308.1 coding downstream 174189 13782930 ~ 13783046 (-)
XLOC_001081 NA coding downstream 210117 13733386 ~ 13747118 (-)
XLOC_001078 NA coding downstream 278987 13364806 ~ 13678248 (-)
XLOC_001085 CR388002.1 coding upstream 84664 14074307 ~ 14074375 (-)
XLOC_001086 NA coding upstream 118057 14107700 ~ 14115410 (-)
XLOC_001087 camk2d2 coding upstream 173863 14163506 ~ 14234076 (-)
XLOC_001088 pde5aa coding upstream 267515 14257158 ~ 14258409 (-)
XLOC_001089 wfs1a coding upstream 324207 14313850 ~ 14332283 (-)
XLOC_001090 NA non-coding upstream 408109 14397752 ~ 14406391 (-)
XLOC_001092 NA non-coding upstream 442411 14432054 ~ 14454434 (-)
XLOC_001094 CR847936.7 non-coding upstream 525802 14515445 ~ 14515539 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
bowfin (Amia calva) AMCG00014606 NA coding CM030128.1 CM030128.1 19296416 ~ 19317255 (+)