XLOC_010841 (fbxl4)


Basic Information

Item Value
gene id XLOC_010841
gene name fbxl4
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 32566218 ~ 32582798 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00021208
GTGCGAGCAATGACAGCAGCAGTGAGAGATGGATCGAGAGCGCAGGACACACTCAGCACAACACTCCAACACACCATTGCATCACCTGTCATGCATGCGGCTTGGCCTATAGCCTGTGCTGTATAGAGCCTGTCGTGCTACAGTGCAGGGAAGAGACGCAGGCTGTGCTTCCTGACTCAAACCCAGCCCTGCTGCTCCATGTTTCCTATGCTAACCCTTCTCAGCATGTTTTACTATATCTGTCTACGGCGACGCTCCAGGAGCGGGACGCGCAGCGAAGCGTTGGGTAGCCGACGGGCGGTGGAGCTAGGTCAACGTTCAGCGCTGCCCGTGACTGTAGAGGTTGAGCAGTACGGCAAGGAGATCCTGGACTTCAGCTCTCACTACGGCAGTGAGAACAGCATGTCCTACACCATGTGGAACCTAGCAGGAGTGCCTAACGTGTACCCGAGCTCAGGAGACTTCACCCAGACTGCTGTGTTTCGCACTTATGGAACCTGGTGGGAGCAGTGTATCAGCTCTACGCCTCGATTCCGCCGTACGCCACCCAGTTTCCACAGCCAGGACTACTTGGAACTGGCCTTCGAGGAGCCTGTCTATCCCACAGCAGTGGAGGTGCTGGAGACCTACCACCCCGGAGCTATTGTTAAGATCATGGCGTGCTCGCTCAACCCTTTCTCCCAGAACCCACCGACTGATGTGAGGTGGGAGGTTCTGTGGTCTGGCAAACCCAACAAGGCTTTGACCCCTCAAGCTCGCCAGTTCTCCCCCAATATCAAGCAGATCAGCTTCACCACCAACCTGCTGCGCCTGGAGGTCAACAGCTCTCTGCTGGACTACTACACTGAGCTGGATGCAGTGATCCTGCGAGGAGTTCGAGAGAGACCCATCCTGGCCCTCTATAAGATCCCGGTCATCGACATCAATGATCTGAGTGACAGTGAAGAGGAGATCAGCGAAGCAGGAGGCTTGTGCTGCCGCTCGACTGCAGAGAACAGGCAGAGTCTGGCCAACGGATACTTTGACAGACTCCCTTATGAGCTTATCCAGCTGATTGTGAGTCACCTGCCGGTTCCAGACCTGTGTCGACTGGCTCAAAGCTGCAAGCTCTTCCACAAGCATTGCTGTGACCCGCTGCAGTACATCCAGCTGAGCCTGCAGCCATACTGGGCACGGCTCACAGACGCCTCCCTGTGCCATCTGCAGAGTCGCTGTACCCTTCTGCAGAGACTCAACCTGTCCTGGACGGGCAACCGTGGAGCCGTGACGCCCGCCGGCTTCTGCAGcttTATGAAGGCCTGTGGGGCGAGTCTGGTGTGTTTGGAGGTGTCGTGCTGTCATTTCCTGACCGAAGCGTGTTTAGAAGTGATCACTCAGACATGTCCTTGCCTCCAAGAGCTCAATTTGGCTTCCTGTGACCGTCTGCAACCTCAGGCCTTCAATCACATCGCCAAACTCACCCATCTGCGCAGGCTCGTGCTCTACCGCACCAAAGTTGAGCAATCAGCCATATTGAGCATTCTAACATTCTGCCCAGAGCTCAGACACCTCAACCTGGGGAGCTGTGTAATGATTGAGGACTATGATGTGGTTGTGAGTATGCTGAGCGCCCGCTGTCGTTCTCTGCGTTCTCTGGACCTGTGGCGCTGCAGAAATCTGAGTGAGCGTGGTCTGGCCGAGCTGGTTTCAGGCTGCCGGCTGCTGGAGGAGCTGGATCTGGGCTGGTGCTCCACACTTCAGAGCAGCTCCGGCTGTTTCCAGCACTTGGCCCGCAGTTTACCCCGTCTGCGCAAACTCTTCCTCACCGCAAATCGCACTGTCTGTGACGCAGACCTGGAGGAGCTGGCCGCCAACTGCAGTGCTCTGCAGCACCTTGATATACTGGGCACACGGATGGTGAGTTCAGCCTCTCTAAGAAAGTTACTGCAGTGTTGTCCTCGTCTGAAGCTGCTGGACGTGTCCTTCTGCTCACAGATCGACTCACGCTTTGTCCAAGAGCTCAATGGCCTTTTCCCGAATGTGTCCATCAAGAAAAGCTTCACTcagtaaaacacaaaaataaataaataaataaataaataaaaagtgggtCTGAGCAGGATGGACTTTGAGACCCCGGGGAGAAGCCTTGCGCTTTCTGGTGCTGTGAACTCGCTGCCTTCAACTGCAGGAGCTGTGAACTGCCCTTCCAAGACGTCACGGATGTTTCACTCACTCTAACTATGTGTTGAATCTTACAATTTCATCAGACCTCAGTTTTGATCTTAATCTCAgggttttatttttgtcttcagagagagagagcgagagagacgtTTGTAGTATGCTGTACTACAACCcagtggttttgttttaaaccTAGCGTATCAGTATCAGtgttttatttgcattgttaAATGTTGTCAGATCGATGTTGTGAAATAGTAACATGGCgtactatgattatttattgatccATTTATAAATTCAGGGCCACACTGACTTGAATCGCGGGCACAGAAATCTTTTGTGGCAATACCTAGTTTGGGTTGAGACTTCTTATGCACTCGTACACAATAGGGCAAAACCAAAACATAAGCTTTTCTCTATTGCAAAACTTGACGTTTACTTTTGCGCATGCTATAGCTGGTAGATGACATATCCTTGTGCCTTAGGTGTCAAGAGAGAagtgctttgtgtgtgtgcgtgtgtgtgtgcgtgcgtgctggTTGTCTATTGTGCTATGCTAAAATTGTGATTTGCCAAAATCACCCTAAACCAAagggttttttctttcttttaattttgaaaaacacTCTAACAGCATTGTACTGTATTTTCTTTAAAGGTGTACAGTTATTCAAATCAAAACAAGAATTATTGGAGTTTTTTTGGTAAAAGTTTTTTAAGTGCCACATTTTTTAGAATAATGTTTGGATCTGACTTACCTGTACTTTACTCTAGCGTACTAAGCACACCACGTTAACACTGAAGTAAcctaacattattttatttctgttaaattgtacagtgattttttttttgtcattttggatATTGAATTAATTCATGCTGTTCGAGAGTTTTAGCATCATTTCAGATCTGAGAGTGACAGTCATGAGGTCTTGGTTCAATAAAGTGAGGCTTAATA

Function

symbol description
fbxl4 Predicted to be involved in SCF-dependent proteasomal ubiquitin-dependent protein catabolic process. Predicted to be part of SCF ubiquitin ligase complex. Human ortholog(s) of this gene implicated in mitochondrial DNA depletion syndrome 13. Orthologous to human FBXL4 (F-box and leucine rich repeat protein 4).

GO:

id name namespace
GO:0006511 ubiquitin-dependent protein catabolic process biological_process
GO:0031146 SCF-dependent proteasomal ubiquitin-dependent protein catabolic process biological_process
GO:0019005 SCF ubiquitin ligase complex cellular_component

KEGG:

id description
ko04121 Ubiquitin system
ko03029 Mitochondrial biogenesis

ZFIN:

id description
ZDB-GENE-041114-187 Predicted to be involved in SCF-dependent proteasomal ubiquitin-dependent protein catabolic process. Predicted to be part of SCF ubiquitin ligase complex. Human ortholog(s) of this gene implicated in mitochondrial DNA depletion syndrome 13. Orthologous to human FBXL4 (F-box and leucine rich repeat protein 4).

Ensembl:

ensembl_id ENSDARG00000026941

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00021208 True 3130 mRNA 0.49 8 32566218 32582798

Neighbor

gene id symbol gene type direction distance location
XLOC_010840 NA coding downstream 6435 32558055 ~ 32559783 (-)
XLOC_010839 NA coding downstream 176744 32387576 ~ 32389474 (-)
XLOC_010838 NA coding downstream 187542 32348773 ~ 32378676 (-)
XLOC_010837 mms22l coding downstream 261438 32281200 ~ 32304780 (-)
XLOC_010836 calhm6 coding downstream 332755 32226664 ~ 32233463 (-)
XLOC_010843 NA coding upstream 4640 32587438 ~ 32627440 (-)
XLOC_010844 faxcb coding upstream 47276 32630074 ~ 32649929 (-)
XLOC_010845 coq3 coding upstream 69552 32652350 ~ 32673028 (-)
XLOC_010846 usp45 coding upstream 93719 32676517 ~ 32727199 (-)
XLOC_010847 NA coding upstream 159544 32742342 ~ 32819765 (-)
XLOC_010626 CR392024.2 misc downstream 11671043 20895112 ~ 20895175 (-)
XLOC_010831 CR854927.2 non-coding downstream 402423 32152199 ~ 32163795 (-)
XLOC_010829 NA non-coding downstream 516225 32043389 ~ 32049993 (-)
XLOC_010852 BX537338.1 non-coding upstream 932968 33515766 ~ 33541958 (-)
XLOC_010853 NA non-coding upstream 978065 33560863 ~ 33592580 (-)
XLOC_010855 NA non-coding upstream 1152530 33735328 ~ 33736759 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000027_09668229_09671091 NA coding CI01000027 null 9667090 ~ 9671091 (-)