CI01000091_00337653_00338300 (CLDN3A)


Basic Information

Item Value
gene id CI01000091_00337653_00338300
gene name CLDN3A
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000091
NCBI id null
chromosome length 1322612
location 337647 ~ 338587 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000091_00337653_00338300.mRNA
ACAAGCATTTGCAGTCTCTATTGATGTGCATTGGCATTCTCCATTATGTTTTGTTCTTAATTCCCAATACAGTTTTAGTTCTAATGTGACTAAGCCCTTCCTCTGTGTAACGCATCCTAACAGACTCCTCCTCTCTACCTGATCTGGGGTATAAAGGACACTTATTTTGTCACAGATGTGCTCCATTTGCTCTGAGGCATTGGCTCAAATTAGGCTTATATCTGCTCCAGTTATTTTACCAGCAGCTCTTGTATTGCATGTAGCTGTCACTGATCCTTTCAGAAGTCATGTCTTTAGGGCTGGAGCTCATAGGTATTGTGTCATGTGTGCTGGGTTGGCTCTTGGCCATTGTGGCTTGTGCTCTTCCCATGTGGAGGGTCACAGCCTTCATCGGCTCCAACATCGTGACGGCTCAGATCATCTGGGATGGTCTGTGGATGTCCTGTGTGGTTCAGAGTACCGGACAGATGCAGTGTAAAGTCTATGACTCCATGCTGGCCCTCTCTCAGGACCTCCAGGCAGCTCGAGCCCTGACTGTGATATCCATCCTTCTGACCGTCCTGGCTGTATTGGTGTCCATCGGGGGAGCCAAGTGCACTAACTGCATTGAGGATGAATCGTCCAAAGCTAAAGTTATGATCTTTGGAGGGGTGCTCTTCATTGTGGCTGGGTTTATGCAGCTGATTCCTGTCTCCTGGTCTGCCAACAGTATCATTAGGGACTTCTACAACCCTTTGCTGCCAGATGCCCAGAGACGGGAGCTGGGAGCGGCGCTCTACATCGGCTGGGCAGCAGCTGCGCTCTTGATTATGGGGGGCTCCTTGCTCTGTTGCTCCTGTCCACCACAGGAGAAAAAATATAGCCAGTCTAGAATGCCGTATCCTGCGTCTCGCTCAACAGGTGGGGGAGGGTATGACAGAAGAGACTATGTGTGAAATAAA

Function

symbol description
cldn3a Is expressed in brain and testis.

NR:

description
Claudin h

GO: NA

KEGG:

id description
K06087 CLDN; claudin

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000091_00337653_00338300.mRNA True 941 mRNA 0.49 1 337647 338587

Neighbor

gene id symbol gene type direction distance location
CI01000091_00265846_00269683 NA coding downstream 67287 265840 ~ 270360 (-)
CI01000091_00108499_00117102 CDKL1 coding downstream 218538 108220 ~ 119109 (-)
CI01000091_00346274_00346930 NA coding upstream 7430 346017 ~ 347510 (-)
CI01000091_00348777_00349430 NA coding upstream 9880 348467 ~ 349729 (-)
CI01000091_00400737_00412559 NA coding upstream 61853 400440 ~ 412559 (-)
CI01000091_00465845_00496451 MMP28 coding upstream 126409 464996 ~ 496600 (-)
CI01000091_00502517_00506846 NA coding upstream 163930 502517 ~ 506846 (-)
G303005 NA non-coding downstream 3715 333688 ~ 333932 (-)
G303002 NA non-coding downstream 8179 329224 ~ 329468 (-)
G302970 NA non-coding downstream 96354 241060 ~ 241293 (-)
G302946 NA non-coding downstream 147752 189586 ~ 189895 (-)
G302939 NA non-coding downstream 165304 172098 ~ 172343 (-)
G303017 NA non-coding upstream 29500 368087 ~ 369165 (-)
G303019 NA non-coding upstream 31376 369963 ~ 390965 (-)
G303077 NA non-coding upstream 288404 626991 ~ 627441 (-)
G303123 NA non-coding upstream 674873 1013460 ~ 1013753 (-)
G303133 NA non-coding upstream 713936 1052523 ~ 1052915 (-)
G303047 NA other upstream 136015 474602 ~ 562944 (-)

Expression


Co-expression Network