CI01000091_00465845_00496451 (MMP28)


Basic Information

Item Value
gene id CI01000091_00465845_00496451
gene name MMP28
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000091
NCBI id null
chromosome length 1322612
location 464996 ~ 496600 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000091_00465845_00496451.mRNA
AGCCTCTGCTTTGAAAGCCGTTCAGCTGCGCACCAGTGACAACTATCTATCGCTCTTCTTTTGAGTTTTATCAGAATTTTATCGTGATGGGATCTATTTTCATATGGTGATTTTAGAAATAAAGAGTGCGCACAGTGCACAGATATACAATGTTTGTGCTGCTGTCAATGGTGCTGTGCGTTCAGACCGCTGTGAGCTCTCCAATCTCCACAGCTGCTCAGGGTTTTCTGGAGCGATATGGATACCTGCAAAAGGAGAATGAAACTCATCATACAGCTGAAGTCAAGTCTGCCATCAGAGAGTTTCAGTGGTTCTCTCAGCTACCTGTCACTGGAAGGCTGGACAGTGCCACTCTGGAGAAGATGACATCTGCCCGCTGCGGAGTTAAAGACATTGGTAGCCGTAGTTCCTGGAGCCAAAGGGTTAACAGTATCTTCACAGGCCGTTTGGGCAGGCATAGGCGGCATGAGCAGCATCTCCGTAAGAAGCGCTACATTCAGACAGGAGAGAAATGGCACAAACGTCACCTCACCTATCGTATCATGAACTGGCCACGGAGTCTTTCTCCCAGTCAAGTGCATCTGGCGGTGGACACAGCATTCCAGCTCTGGAGTAATGTGTCCGGGCTGCTCTTTCAGGAGCTCCAGCAGGGTCCCACCGACATCCGGCTGGCCTTCTTTGAAGGGGAACATAATGATGGGATGGGAAATGCATTTGATGGGCCAGGTGGCACTCTGGCTCATGCATTTTTCCCATTCCGCGGTGAAGCTCATTTTGATATGTCTGAACGCTGGACCCTGAATAGTCTTAAGGGACACAACTTGTTCCTTGTGACGGCCCATGAAATTGGCCACACTCTGGGTTTGGTTCATTCACCTGTTCGTCATGCACTCATGTCACCATACTATAAGAAGATTGGTTCTAAAGCGATGCTCAGCTGGGATGACATCACTGCGATACAACAACTGTATGGTAAACCACCTGGGGATACAATAAAGCAGCTTGCGGGACGGGCTCTGAGATGGGCCATGCAGGATTGGCAGATTTCTCAAGATCATAAGGGAGGTTCCCTCACACCCCACTACTGCCAGGGTTTCTTTGATGCCATCACCATGGATGAGAATGGGACAGTGCTGGTGTTTCAGGGCCATAATTTCTGGACGGTATCTAATGGCAGTGTGAGCGATCCTCTTCCACTTCAGACACGCTGGCCGCAGCTGTCATTGGCTGTTGAAGCAGCCGCCTTCTCACCACTGGACAGCAAACTCTACTTCTTTAAAGGAAGACGGATGTGGCGTTACTCAGGCTCTGATCTGGACCCTGGATTCCCCAAGAAGAACAGTGAATTGGGCTTACCGAAGCACCCTGACTGCACCTTCTTCTACCAGCCCCTGGGCCATATGGTGCTCTTCAAAGGGTCCCGCTACTTTGTCCTGAATCTTGAATCTCTTAGCATAGAGCCGTACTATCCTCGTTCTCTGAGGGACTGGAAGGGTATTCCACATGGGGTAAATGGGGTCTTGACTCGGCCAGACGGAAAGCTGTATTTCTTTAAGGAGCAGCAGTACTGGAGGTTTGATCCTGGGAAGGTGCGCATTACTGCGACTGGACAGTGGGCAAAGAGGCTGCAATGGACTGGCTGCCACAGAACTCCATCATTACAGGGTAACAAGCTACTCTGACCAGAAGAGGGAGCTAAACTAGATTCACAATATTAAGAGGCATTTAGGATATGTGCAATTCATGTGTGGCCTAATGGTTTAATCTGGGAAAAGGTCTTTCTTGCAGTCTACAAATGCAAAGATAAGTTAGATAAGATTTTTTTTAAATGTTTTTGAAGGAAGTCTCTTTTGCTCACCAAGGCTGCATTTATTTGATCAAAAATATAGTAAAAACAGTAATGTTGGAAATATTACAGTTTAATATAATGCCTTGTAATTTAATAGATGCCTCAGAAGGCCTGGTCTACGAAGGACACAGACTCACTACAGCACAATGTCATCTTTAACCTTCGGGCACAACATAAAACAGTCATAATCACACCAAGGCTGAATTTATTTGATTAAACATACAGCTAGTCTTCAGTGTCACATGATCCTTCATAAATTATTCTAATATGCCGATTTGCTGCTCAAGAAACATTTATTATTATTATCAATGTTGAAAATCAATGATCTTTTTTTTTTTTTTTTAATACTTTTATTTAGCAAAGACACATTAAATGTATTTAAGTGACGGTAAAGACATTTATAATGTTACAAATGATTTCTATTTCAAATAAATGCTGTTCTTTTGAACTTTCTGTTTCAGCATTGATAATAAGAATCATTATTAATAACTGGTTACCAATAATAACTGAGCATAATAACTGAACTTGCCAACACAGGAATAAATTACATTTTAAAATATATATTCACATGGAAAACAGTTATTTTAAATTGTTATAATATTTCACAATATTACTGTTTTTAATCAAATAAGTCCAGCCTTGGTGTAGTCATCAGTTTTATGTTGAGTGCCCGAAGATTAAA

Function

symbol description
mmp28 Predicted to enable metalloendopeptidase activity. Acts upstream of or within glial cell development and retina development in camera-type eye. Predicted to be located in extracellular matrix. Predicted to be active in extracellular space. Orthologous to human MMP28 (matrix metallopeptidase 28).

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000091_00465845_00496451.mRNA True 2531 mRNA 0.43 8 464996 496600

Neighbor

gene id symbol gene type direction distance location
CI01000091_00400737_00412559 NA coding downstream 52437 400440 ~ 412559 (-)
CI01000091_00348777_00349430 NA coding downstream 115267 348467 ~ 349729 (-)
CI01000091_00346274_00346930 NA coding downstream 117486 346017 ~ 347510 (-)
CI01000091_00337653_00338300 CLDN3A coding downstream 126409 337647 ~ 338587 (-)
CI01000091_00265846_00269683 NA coding downstream 194636 265840 ~ 270360 (-)
CI01000091_00502517_00506846 NA coding upstream 5917 502517 ~ 506846 (-)
CI01000091_00522844_00581962 POR.L, PORB, POR coding upstream 25351 521951 ~ 581962 (-)
CI01000091_00637317_00642235 NA coding upstream 140568 637168 ~ 642235 (-)
CI01000091_00649152_00693081 DOCK10 coding upstream 151840 648440 ~ 693081 (-)
CI01000091_00712098_00724120 NA coding upstream 214916 711516 ~ 724374 (-)
G303019 NA non-coding downstream 74031 369963 ~ 390965 (-)
G303017 NA non-coding downstream 95831 368087 ~ 369165 (-)
G303005 NA non-coding downstream 131064 333688 ~ 333932 (-)
G303002 NA non-coding downstream 135528 329224 ~ 329468 (-)
G302970 NA non-coding downstream 223703 241060 ~ 241293 (-)
G303077 NA non-coding upstream 130391 626991 ~ 627441 (-)
G303123 NA non-coding upstream 516860 1013460 ~ 1013753 (-)
G303133 NA non-coding upstream 555923 1052523 ~ 1052915 (-)
G303138 NA non-coding upstream 563946 1060546 ~ 1060765 (-)
G303148 NA non-coding upstream 578780 1075380 ~ 1075589 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location