Gene
RNA
| Item | Value |
|---|---|
| gene id | G302939 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000091 |
| NCBI id | null |
| chromosome length | 1322612 |
| location | 172098 ~ 172343 (-) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU344108 | True | 246 | lncRNA | 0.57 | 1 | 172098 | 172343 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000091_00108499_00117102 | CDKL1 | coding | downstream | 52989 | 108220 ~ 119109 (-) |
| CI01000091_00265846_00269683 | NA | coding | upstream | 93497 | 265840 ~ 270360 (-) |
| CI01000091_00337653_00338300 | CLDN3A | coding | upstream | 165304 | 337647 ~ 338587 (-) |
| CI01000091_00346274_00346930 | NA | coding | upstream | 173674 | 346017 ~ 347510 (-) |
| CI01000091_00348777_00349430 | NA | coding | upstream | 176124 | 348467 ~ 349729 (-) |
| CI01000091_00400737_00412559 | NA | coding | upstream | 228097 | 400440 ~ 412559 (-) |
| G302938 | NA | non-coding | downstream | 571 | 171234 ~ 171527 (-) |
| G302937 | NA | non-coding | downstream | 1648 | 169950 ~ 170450 (-) |
| G302934 | NA | non-coding | downstream | 5127 | 166757 ~ 166971 (-) |
| G302931 | NA | non-coding | downstream | 7690 | 164203 ~ 164408 (-) |
| G302924 | NA | non-coding | downstream | 20547 | 151203 ~ 151551 (-) |
| G302946 | NA | non-coding | upstream | 17243 | 189586 ~ 189895 (-) |
| G302970 | NA | non-coding | upstream | 68717 | 241060 ~ 241293 (-) |
| G303002 | NA | non-coding | upstream | 156881 | 329224 ~ 329468 (-) |
| G303005 | NA | non-coding | upstream | 161345 | 333688 ~ 333932 (-) |
| G303017 | NA | non-coding | upstream | 195744 | 368087 ~ 369165 (-) |
| G303047 | NA | other | upstream | 302259 | 474602 ~ 562944 (-) |
